CV712513

Overview
NameCV712513
Unique NameCV712513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4_ARATH (Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.049e-93
Identity = 176/235 (74.89%), Postives = 198/235 (84.26%), Query Frame = 3
Query:    3 SMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRHGEGLNIQSIKDTIQTTNGDMLID 707
            +MLAFTSE+I APFLLPEM+ERVA+MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDGRSYNEQLF+A ADVL +IGE+GRIIQEF+ELG                LG+IPDEFLDPIQYTLM+DPVILPSSRITVDRP+IQRHLLSD  DPFNR+HLT+DMLIP+ ELKAKI+EF+KS   K+   G +  S K+ IQTTN DMLID
Sbjct:  805 TMLAFTSEEITAPFLLPEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDGRSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPIQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFVKSHQSKKRTSGED-SSNKERIQTTNSDMLID 1038          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4A_BOVIN (Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.830e-44
Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 3
Query:    9 LAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 614
            LAF + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI + G +I  F  L                   D  DEFLDPI  TLM DPV+LPSSR+TVDR  I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  857 LAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4A_HUMAN (Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 7.615e-44
Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 3
Query:    9 LAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 614
            LAF + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI + G +I  F  L                   D  DEFLDPI  TLM DPV+LPSSR+TVDR  I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  857 LAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4A_PONAB (Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.299e-43
Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 3
Query:    9 LAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 614
            LAF + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI + G +I  F  L                   D  DEFLDPI  TLM DPV+LPSSR+TVDR  I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  857 LAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4A_RAT (Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.419e-43
Identity = 96/202 (47.52%), Postives = 126/202 (62.38%), Query Frame = 3
Query:    9 LAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 614
            L+F + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI + G +I  F  L                   D  DEFLDPI  TLM DPV+LPSSR+TVD   I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  857 LSFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVTVDGSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UFD2_YEAST (Ubiquitin conjugation factor E4 OS=Saccharomyces cerevisiae GN=UFD2 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.108e-40
Identity = 91/205 (44.39%), Postives = 125/205 (60.98%), Query Frame = 3
Query:   21 SEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIE----LGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 623
            S+ I A F+ PE++ R+ASMLNY L  LVGP+   L +KDP+ Y F PK LLK +  +Y++L+    Q+ F +A++ D RS+N  LF  A D+L +  + G    EFIE                       GD+PDEFLDP+ YT+MKDPVILP+S++ +DR  I+ HLLSD+TDPFNR  L  + + PN EL+ KI  F K +
Sbjct:  752 SKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKDERSFNRNLFVRAVDILGR--KTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 951          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UFD2_SCHPO (Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe GN=ufd2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.426e-36
Identity = 85/210 (40.48%), Postives = 123/210 (58.57%), Query Frame = 3
Query:    6 MLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK----IGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 623
            ML   +  I   F   E+++R+A+MLNY L  L GP+  +L ++DP KY F  K LL  I  +Y++L     +  F  A++ DGRSY++++F  A  ++ K       D   I+EF+                   +GDIPD FLDP+ +T+MKDPV+LP S I++DR  I+ HLLSDATDPFNR+ LT D + PN  L+ +I  F+KS+
Sbjct:  798 MLKLFTSSIPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLCN---EPAFVEAVAHDGRSYSKEIFERATSIMTKHNLKSSFDIEAIKEFVN---RVEAFRLQEATEEEDMGDIPDYFLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDTLREEINTFLKSK 1001          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4B_MOUSE (Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.347e-32
Identity = 87/214 (40.65%), Postives = 120/214 (56.07%), Query Frame = 3
Query:    6 MLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRI-IQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 638
            M    ++Q+  PFL PE+  R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL Q+  IY+ L  AR      F  AI+ D RSY+++LF      + K G    I I++F  L                   D PDEF DP+  TLM DPV LPS  + +DR +I RHLL+  TDPFNR  LT  ML P  ELK +I+ +++ +    H
Sbjct:  967 MFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQSSDH 1173          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4B_HUMAN (Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.347e-32
Identity = 88/214 (41.12%), Postives = 120/214 (56.07%), Query Frame = 3
Query:    6 MLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRI-IQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 638
            M    ++Q+  PFL PE+  R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL Q+  IY+ L  AR      F  AI+ D RSY+++LF      + K G    I I++F  L                   D PDEF DP+  TLM DPV LPS  I +DR +I RHLL+  TDPFNR  LT  ML P  ELK +I+ +++ +    H
Sbjct: 1096 MFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH 1302          
BLAST of CV712513 vs. ExPASy Swiss-Prot
Match: UBE4_CAEEL (Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.482e-26
Identity = 71/193 (36.79%), Postives = 107/193 (55.44%), Query Frame = 3
Query:   39 PFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDG-RIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 614
            PF  P + ER+A+MLN+ L QL+G +   L +KDP  Y + P++ +  ++ IY+ L        F   I+ D R+Y+ + F  A + + K    G   ++ F  L                   D+P+EF DPI   +M DPV LPS  + +DR VI+RHLLS   +PFNR+ L+ + L P++ELKAKI+E+I
Sbjct:  785 PFRTPVLGERLAAMLNHNLSQLIGSKASELKVKDPRSYGWEPREFVSLLISIYLKL----NMPAFVKYIAYDERTYSPEFFHNAIECMRKNSIVGFSQLESFEHLAEDVKKEYEAKAELEEEYDDVPEEFKDPIMDAIMVDPVKLPSGHV-MDRAVIERHLLSTPNNPFNRAPLSHNELSPDSELKAKIQEWI 972          
The following BLAST results are available for this feature:
BLAST of CV712513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
UBE4_ARATH3.049e-9374.89Probable ubiquitin conjugation factor E4 OS=Arabid... [more]
UBE4A_BOVIN5.830e-4448.51Ubiquitin conjugation factor E4 A OS=Bos taurus GN... [more]
UBE4A_HUMAN7.615e-4448.51Ubiquitin conjugation factor E4 A OS=Homo sapiens ... [more]
UBE4A_PONAB1.299e-4348.51Ubiquitin conjugation factor E4 A OS=Pongo abelii ... [more]
UBE4A_RAT8.419e-4347.52Ubiquitin conjugation factor E4 A OS=Rattus norveg... [more]
UFD2_YEAST5.108e-4044.39Ubiquitin conjugation factor E4 OS=Saccharomyces c... [more]
UFD2_SCHPO3.426e-3640.48Ubiquitin conjugation factor E4 OS=Schizosaccharom... [more]
UBE4B_MOUSE1.347e-3240.65Ubiquitin conjugation factor E4 B OS=Mus musculus ... [more]
UBE4B_HUMAN1.347e-3241.12Ubiquitin conjugation factor E4 B OS=Homo sapiens ... [more]
UBE4_CAEEL5.482e-2636.79Probable ubiquitin conjugation factor E4 OS=Caenor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712513 ID=CV712513; Name=CV712513; organism=Citrus sinensis; type=EST; length=825bp
TCAGCATGCTGGCATTCACATCAGAGCAGATTGTGGCTCCTTTCCTACTC
CCTGAGATGATTGAAAGAGTGGCCAGTATGCTCAATTATTTTCTATTACA
ACTTGTTGGCCCCCAGAGAAAATCTCTTACTCTTAAAGACCCTGAAAAGT
ACGAATTTCGCCCAAAGCAGTTGCTGAAGCAGATTGTGTGCATATATGTC
CATTTGGCAAGAGGTGATACGCAAAACTTATTTCCAGCTGCCATCTCCAG
TGATGGTCGTTCGTACAACGAGCAGTTGTTTAGTGCTGCAGCAGATGTAC
TGTGGAAAATTGGTGAAGACGGTAGGATTATACAAGAGTTTATTGAGTTA
GGTGCAAAAGCCAAAGCTGCAGCCTCTGAGGCCATGGACGCCGAAGCTGC
CCTTGGAGATATACCGGATGAATTCCTTGATCCAATTCAGTACACTTTGA
TGAAGGATCCGGTCATTTTACCTTCGTCAAGAATCACAGTTGACAGGCCT
GTCATTCAGAGGCATCTTCTCAGTGATGCTACGGATCCATTCAATCGATC
TCATCTTACAGCAGACATGTTGATACCAAACACCGAATTGAAGGCAAAAA
TTGAGGAATTCATCAAGTCCCAAGGATTAAAGCGACACGGGGAAGGCTTA
AACATTCAGAGCATCAAGGATACAATACAAACCACTAATGGGGATATGTT
AATTGATTAGGGCCATTTCAAATTCTTGATTTTGGAATGTAATTAATCTT
ATCTGTTTTAAATTATAGAAATGTCTCATCGGTCCTGACTCATGAGTCTT
GAGCCTGTAAAGTGGTTATTACCGC
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