CV712506

Overview
NameCV712506
Unique NameCV712506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712506_ssr491 microsatellite CV712506_ssr491:491..500. BLAST: Citrus ESTs to Prunus persica proteins V1
CV712506_ssr498 microsatellite CV712506_ssr498:498..509. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CV712506 vs. ExPASy Swiss-Prot
Match: AMP23_MACIN (Vicilin-like antimicrobial peptides 2-3 (Fragment) OS=Macadamia integrifolia GN=AMP2-3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 41/150 (27.33%), Postives = 77/150 (51.33%), Query Frame = 2 
Query:    2 NIGIFMVNLTKGSMMGPHWNPMATEIAIVLHGQGMVRVVCP---------STGKQSD------CKNMRFKVEEGDAFAVPRFHPMAQMSFNNDXXXXXXXXXXXXXNYPQFLAGK-RSVLQELDKQILSVSFNVSNTTINQLLARQEEYI 403
            ++ +F+ N+T+GSMMGP +N  +T++ +V  G+  V + CP           GK+ +       + +R ++ + +A  V   HP+  +S  N+             N+  FLAG+ R+VLQ+++ Q + ++F  S   + +L   Q+E I
Sbjct:  445 DVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRGGGKRHEEEEEVHYEQVRARLSKREAIVVLAGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAASRKEVEELFNSQDESI 594
[Close]
BLAST of CV712506 vs. ExPASy Swiss-Prot
Match: AMP22_MACIN (Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 40/150 (26.67%), Postives = 77/150 (51.33%), Query Frame = 2 
Query:    2 NIGIFMVNLTKGSMMGPHWNPMATEIAIVLHGQGMVRVVCPST---------GKQSD------CKNMRFKVEEGDAFAVPRFHPMAQMSFNNDXXXXXXXXXXXXXNYPQFLAGK-RSVLQELDKQILSVSFNVSNTTINQLLARQEEYI 403
            ++ +F+ N+T+GSMMGP +N  +T++ +V  G+  V + CP           GK+ +       + ++ ++ + +A  VP  HP+  +S  N+             N+  FLAG+ R+VLQ+++ Q + ++F      + +L   Q+E I
Sbjct:  486 DVSVFIANITQGSMMGPFFNTRSTKVVVVASGEADVEMACPHLSGRHGGRRGGKRHEEEEDVHYEQVKARLSKREAIVVPVGHPVVFVSSGNENLLLFAFGINAQNNHENFLAGRERNVLQQIEPQAMELAFAAPRKEVEELFNSQDESI 635
The following BLAST results are available for this feature:
BLAST of CV712506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AMP23_MACIN3.387e-1227.33Vicilin-like antimicrobial peptides 2-3 (Fragment)... [more]
AMP22_MACIN3.387e-1226.67Vicilin-like antimicrobial peptides 2-2 OS=Macadam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712506 ID=CV712506; Name=CV712506; organism=Citrus sinensis; type=EST; length=606bp
AAATATTGGTATTTTCATGGTGAACTTGACAAAGGGCTCGATGATGGGAC
CGCATTGGAATCCAATGGCCACTGAGATAGCAATAGTGCTTCATGGACAA
GGAATGGTTCGGGTGGTTTGTCCGAGCACAGGAAAACAGTCAGACTGCAA
AAATATGAGGTTCAAGGTCGAGGAAGGAGATGCTTTTGCTGTTCCTAGGT
TTCATCCCATGGCTCAGATGTCTTTCAACAACGACTCATTTGTTTTCGTG
GGGTTCAGCACATCTACAAGCACAAATTATCCTCAATTCTTAGCGGGAAA
AAGATCAGTCCTTCAAGAATTAGACAAACAAATTTTGAGTGTATCCTTCA
ATGTTTCTAACACGACAATTAATCAACTATTGGCTCGGCAGGAAGAATAC
ATCATATTAGATTGCACCTCCTGTGCCGAGGAAGAGGAAAGTATAATGCA
GGAAGAGATTAGAAGAGAAAGGGAGGAAGAAGAAGCCAGGGAGAGAGAGA
AAGAAAGAAAGAGAGAGGAGGAAGCAAGAAAGAGACAAGAGGAAGAAGAA
GCAAGAAAAAGAGAGGAGGAGGAAGCCAGAAGAAGAGAGGAAAAAAAAAA
AAAAAA
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