CV712491
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: Y4958_ARATH (Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 3.437e-78 Identity = 119/180 (66.11%), Postives = 137/180 (76.11%), Query Frame = 1
Query: 13 GDGS--RVFRDEEESVNGKVKEG---DESPTAKRFKSERFPLTHWEXXXXXXXXXXXXXXXXCIYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
GDG ++ +DEE +G D+SPT KR KSERFPL+ WE CIYLTMPAA+YGKLK+PRTI+DLRLLK+NL +YA +Y FI+GYCSTYIFMQTFMIPGTIFMSLLAGALFGV+RG +LVV NATAGA SCFFLSKL+GRPLV+W WPEKLRFFQAE+
Sbjct: 9 GDGGARQLVKDEESPAASSAAKGLLNDDSPTGKRTKSERFPLSRWEFAVFFTVFLVFTTGLFCIYLTMPAAEYGKLKVPRTISDLRLLKENLGSYASEYQARFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGFVLVVLNATAGACSCFFLSKLVGRPLVNWLWPEKLRFFQAEI 188 HSP 2 Score: 72.0182 bits (175), Expect = 3.437e-78 Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIPF 727
+IAKRR++LLNYMLFLRITP+LPNLFINL+SPIVDIPF
Sbjct: 187 EIAKRRDRLLNYMLFLRITPTLPNLFINLSSPIVDIPF 224
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_DANRE (Transmembrane protein 41B OS=Danio rerio GN=tmem41b PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.316e-25 Identity = 41/106 (38.68%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 220 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFFQAEV 537
K+K+P+ + D + L L+ Y Y ++ Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + E+ + + +V
Sbjct: 76 KIKIPKDMEDAKALGTVLSKYKDTYYTQVLLAYFATYIFLQTFAIPGSIFLSILSGYLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPMVYKYLTERAQKWSQQV 181 HSP 2 Score: 55.4546 bits (132), Expect = 1.316e-25 Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
Q+ K RE L+NY++FLRITP LPN FIN+ SP++++P
Sbjct: 180 QVDKHREHLINYIIFLRITPFLPNWFINITSPVINVP 216
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41_DICDI (Transmembrane protein 41 homolog OS=Dictyostelium discoideum GN=DDB_G0275543 PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 1.707e-25 Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEKLRFF 525
++LP+ D++LL D L+ Y D I + Y F+Q F IPG++F+S L+G LFG+ G LV F AT GA+ + +S IGR LV +P+KL+ F
Sbjct: 131 IRLPKNFKDVKLLSDILSQYTDDNYFIVITTFGVIYTFLQAFSIPGSVFLSFLSGGLFGLKVGFPLVCFVATLGATFSYLISYYIGRNLVRKLFPDKLKLF 231 HSP 2 Score: 56.225 bits (134), Expect = 1.707e-25 Identity = 23/36 (63.89%), Postives = 33/36 (91.67%), Query Frame = 2
Query: 617 IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
++++R+ LLNY++FLRITP LPN FINLASP++D+P
Sbjct: 235 LSQKRDNLLNYIVFLRITPFLPNWFINLASPLLDVP 270
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41_DROME (Transmembrane protein 41 homolog OS=Drosophila melanogaster GN=CG8408 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.708e-25 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 187 IYLTMPAADYGKLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
I+ + A++ LK+PR I D ++L L Y Y + G Y+F+QTF IPG++F+S+L G L+ L L+ F + GA+ C+ LS L+GR L+ FWP+K
Sbjct: 102 IFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYVFLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGRRLIRHFWPKK 210 HSP 2 Score: 52.7582 bits (125), Expect = 1.708e-25 Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 2
Query: 617 IAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
+ + R+ L NYMLFLR+TP LPN FINLASP++ +P
Sbjct: 218 VEEYRDSLFNYMLFLRMTPILPNWFINLASPVIGVP 253
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_CHICK (Transmembrane protein 41B OS=Gallus gallus GN=TMEM41B PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.921e-25 Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 187 IYLTMP--AADYGK-LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
+Y P + + GK +K+PR + D + L L+ Y + V ++ Y +TY+F+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK
Sbjct: 49 VYKNFPQLSEEEGKCIKIPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYVFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 160 HSP 2 Score: 54.6842 bits (130), Expect = 4.921e-25 Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P
Sbjct: 167 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVP 203
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_RAT (Transmembrane protein 41B OS=Rattus norvegicus GN=Tmem41b PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.394e-25 Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1
Query: 223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
+K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK
Sbjct: 86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182 HSP 2 Score: 54.6842 bits (130), Expect = 6.394e-25 Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P
Sbjct: 189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVP 225
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_PONAB (Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.394e-25 Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1
Query: 223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
+K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK
Sbjct: 86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182 HSP 2 Score: 54.6842 bits (130), Expect = 6.394e-25 Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P
Sbjct: 189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVP 225
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_MOUSE (Transmembrane protein 41B OS=Mus musculus GN=Tmem41b PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.394e-25 Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1
Query: 223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
+K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK
Sbjct: 86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182 HSP 2 Score: 54.6842 bits (130), Expect = 6.394e-25 Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P
Sbjct: 189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVP 225
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_HUMAN (Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.394e-25 Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1
Query: 223 LKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
+K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + EK
Sbjct: 86 MKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEK 182 HSP 2 Score: 54.6842 bits (130), Expect = 6.394e-25 Identity = 21/37 (56.76%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
Q+ + RE L+NY++FLRITP LPN FIN+ SP++++P
Sbjct: 189 QVERHREHLINYIIFLRITPFLPNWFINITSPVINVP 225
BLAST of CV712491 vs. ExPASy Swiss-Prot
Match: TM41B_XENLA (Transmembrane protein 41B OS=Xenopus laevis GN=tmem41b PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 8.329e-25 Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 220 KLKLPRTIADLRLLKDNLATYAQDYPVPFIIGYCSTYIFMQTFMIPGTIFMSLLAGALFGVIRGLILVVFNATAGASSCFFLSKLIGRPLVSWFWPEK 513
K+K+PR + D + L L+ Y + V ++ Y +TYIF+QTF IPG+IF+S+L+G L+ L LV + GAS C+ LS L+GRP+V + +K
Sbjct: 72 KIKVPRDMDDAKALGKVLSKYKDTFYVEVLVAYFTTYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYLLSYLVGRPVVYKYLSDK 169 HSP 2 Score: 53.5286 bits (127), Expect = 8.329e-25 Identity = 20/37 (54.05%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 614 QIAKRREKLLNYMLFLRITPSLPNLFINLASPIVDIP 724
Q+ + R+ L+NY++FLRITP LPN FIN+ SP++++P
Sbjct: 176 QVERHRDHLINYIIFLRITPFLPNWFINITSPVINVP 212 The following BLAST results are available for this feature:
BLAST of CV712491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CV712491 ID=CV712491; Name=CV712491; organism=Citrus sinensis; type=EST; length=728bpback to top |