CV712478

Overview
NameCV712478
Unique NameCV712478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712478_ssr658 microsatellite CV712478_ssr658:658..669. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:62..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.270e-43
Identity = 92/109 (84.40%), Postives = 95/109 (87.16%), Query Frame = -3 
Query:  223 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 549
            PVSRSSRAGLQFPVGR+HR LK+             VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Sbjct:   29 PVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.285e-43
Identity = 91/109 (83.49%), Postives = 95/109 (87.16%), Query Frame = -3 
Query:  223 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 549
            P++RSSRAGLQFPVGRVHRLLK              VYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKS+KE
Sbjct:   26 PITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.243e-42
Identity = 91/109 (83.49%), Postives = 94/109 (86.24%), Query Frame = -3 
Query:  223 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 549
            PVSRSSRAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+SKE
Sbjct:   30 PVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.768e-42
Identity = 90/109 (82.57%), Postives = 94/109 (86.24%), Query Frame = -3 
Query:  223 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 549
            PVSRSSRAG+QFPVGR+HR LK              VYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:   31 PVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.374e-41
Identity = 87/109 (79.82%), Postives = 94/109 (86.24%), Query Frame = -3 
Query:  223 PVSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 549
            P+SRS+RAG+QFPVGR+HR LK              VYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++KE
Sbjct:   28 PISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.163e-40
Identity = 85/108 (78.70%), Postives = 93/108 (86.11%), Query Frame = -3 
Query:  223 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 546
            +SRSSRAG+QFPVGR+HR LK+             VYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK +K+
Sbjct:   29 ISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.089e-38
Identity = 83/108 (76.85%), Postives = 89/108 (82.41%), Query Frame = -3 
Query:  223 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 546
            ++RSSRAGLQFPVGR+HRLLK              VYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.089e-38
Identity = 83/108 (76.85%), Postives = 89/108 (82.41%), Query Frame = -3 
Query:  223 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 546
            ++RSSRAGLQFPVGR+HRLLK              VYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 ITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3 
Query:  223 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 546
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
[Close]
BLAST of CV712478 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3 
Query:  223 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 546
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125
The following BLAST results are available for this feature:
BLAST of CV712478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AV3_ORYSJ3.270e-4384.40Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH7.285e-4383.49Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ1.243e-4283.49Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ2.768e-4282.57Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV1_ARATH1.374e-4179.82Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV2_ARATH1.163e-4078.70Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AZL_XENTR1.089e-3876.85Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA1.089e-3876.85Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AZ_SHEEP5.402e-3876.85Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT5.402e-3876.85Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001H03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712478 ID=CV712478; Name=CV712478; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTCTAAAATTATTTAAAAATTAAACAGTAACAGTTAAA
TACCAACATGCGAAAAACAAGCACCACAATTCGTCGCTGCATGAAATGAA
GATTGAAGAATGCAGATTCCTAGCATTAACACATCTCTGGCATCATTTCT
CATTTAGATATTTCAGCACAGCTAAAAGTACACACATAAACAAAGCCGAG
AGGATGATGGTGTCACGAACTACTCTTTGGAGGATTTATTGATGAGGGAC
TTGTGGATATGAGGAATAACTCCTCCACCGGCTATGGTTCCTTTAATGAG
AGTGTCAAGTTCTTCATCTCCTCGGATAGCAAGCTGCAAATGCCTTGGAG
TAATACGTTTGACCTTCAAATCCTTGCTAGCATTCCCTGCCAACTCCAAC
ACTTCGGCAGTTAGATACTCCAAAATGGCTGCTGTATAAACAGCAGCTGT
TGCACCAACCCTTCCGTGAGCAGCAGCCCTTTCCTTTAGCAGACGATGGA
CCCTTCCCACTGGGAACTGAAGACCAGCACGAGAAGAACGGGAGACGGGT
TTCTTCTTGTCCTTATCCTTGTTGTTGTTAATGGTGGTTTTGCCTGTTAT
CAGTCCTTTGGCTCCTTTGCCCGACATTTTCCCGCCTAATTTCTACAGCT
TCTTTTAAATTAATTAATTATTTATTTAATTATTTTTAATTTTTTCTGAG
ATGAAAATTATCGGAGAGGAAAGAAAGAGATAAAGCTAAGCGAGCGTTTG
AGCCT
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