CV712467

Overview
NameCV712467
Unique NameCV712467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2924 contig Csv1_Contig2924:832..1595. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CV712467 vs. ExPASy Swiss-Prot
Match: CCMF_ARATH (Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 39/45 (86.67%), Postives = 39/45 (86.67%), Query Frame = -2 
Query:    2 MVQLHNFFFFITFMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTI 136
            MVQLHNFFFFI FMVV  GTAAPVLLKWFVSRDV TGAP  NGTI
Sbjct:    1 MVQLHNFFFFIIFMVVLCGTAAPVLLKWFVSRDVSTGAPFFNGTI 45
[Close]
BLAST of CV712467 vs. ExPASy Swiss-Prot
Match: YMF03_MARPO (Uncharacterized mitochondrial protein ymf3 OS=Marchantia polymorpha GN=YMF3 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = -2 
Query:    2 MVQLHNFFFFITFMVVPRGTAAPVLLKWFVSRDVPTGAPSSNGTI 136
            MVQL NFFFF+ F+VV  GTAAP+L +W VSRDV TGAP  NGTI
Sbjct:    1 MVQLQNFFFFLIFLVVLCGTAAPILFQWLVSRDVSTGAPFFNGTI 45
The following BLAST results are available for this feature:
BLAST of CV712467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCMF_ARATH3.259e-1486.67Putative cytochrome c biogenesis ccmF-like mitocho... [more]
YMF03_MARPO5.753e-1171.11Uncharacterized mitochondrial protein ymf3 OS=Marc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G20_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712467 ID=CV712467; Name=CV712467; organism=Citrus sinensis; type=EST; length=764bp
TTATAGTACCATTAGAAGAAGGGGCCCCTGTGGGAACATCTCTACTGACG
AACCATTTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATAAA
AGTAATAAAAAAGAAAAAGTTATGTAGTTGGACCATCTGCTCTATCCGTT
CGAGTTTCGCTTCTCTAGAGAAGATGAGACGCTAAAAATGAAAGTGTTCG
CAACGCATACCGAAAGGATACCAATGAAGCCGACCATTAATGACTAGTTC
GAACACCAGGAGCGGTCTGTCTGATCAAATAAGGGATCAGACCGCTCTTA
TCAAGATGAAACAAAAGCAAACTCTCATAGTTTAGTTCGGGTTCGGAGCC
CAGCTCCAACTACTTCTTCGTAAGTGAGGTGAGGTACTTCTTTCGGTTTG
AATAGGGGTCGCCCCTTTTTTGGTTGAAGTAGCTACGACTTTGGTCGTAG
TCAGTTTAAACACATAAACCCAGTCCACTTGCAGCCATGTTGATCAAAAT
GACTAAGTTTCATGACTTGACCAGTCACTCGCCCTCGTATTAAAAGATCA
TCTCACCCTGTGGTCGACATTCCATTCCCCTTAGTCGTAGGTGCTCGTTC
TATTTTGATTTGAATGGGACGGGTCTCCCGAAGTACATATGGTCGACCCT
TCGGGTGTCTCGGTAATACAGAAAAGACGAATTCCAATCACATCCCCTAT
CACTTAAAGCCAATCCTTACCAAAGGTTCGACGTAGTTGAATCGAATAAT
TCTTTTTTCTCCTT
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