CV712457 | Citrus Genome Database

Overview


Name	CV712457
Unique Name	CV712457
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	690

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:758..1447.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_WHEAT (Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_VITVI (Photosystem II reaction center protein I OS=Vitis vinifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_TOBAC (Photosystem II reaction center protein I OS=Nicotiana tabacum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_SPIOL (Photosystem II reaction center protein I OS=Spinacia oleracea GN=psbI PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_SOYBN (Photosystem II reaction center protein I OS=Glycine max GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_SORBI (Photosystem II reaction center protein I OS=Sorghum bicolor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_SOLTU (Photosystem II reaction center protein I OS=Solanum tuberosum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_SOLLC (Photosystem II reaction center protein I OS=Solanum lycopersicum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_SOLBU (Photosystem II reaction center protein I OS=Solanum bulbocastanum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CV712457 vs. ExPASy Swiss-Prot
Match: PSBI_SINAL (Photosystem II reaction center protein I OS=Sinapis alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = -2

Query:  396 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 503
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CV712457 vs. ExPASy Swiss-Prot

BLAST of CV712457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
PSBI_WHEAT	2.296e-13	100.00	Photosystem II reaction center protein I OS=Tritic...	[more]
PSBI_VITVI	2.296e-13	100.00	Photosystem II reaction center protein I OS=Vitis ...	[more]
PSBI_TOBAC	2.296e-13	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_SPIOL	2.296e-13	100.00	Photosystem II reaction center protein I OS=Spinac...	[more]
PSBI_SOYBN	2.296e-13	100.00	Photosystem II reaction center protein I OS=Glycin...	[more]
PSBI_SORBI	2.296e-13	100.00	Photosystem II reaction center protein I OS=Sorghu...	[more]
PSBI_SOLTU	2.296e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLLC	2.296e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLBU	2.296e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SINAL	2.296e-13	100.00	Photosystem II reaction center protein I OS=Sinapi...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001G15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G15, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712457 ID=CV712457; Name=CV712457; organism=Citrus sinensis; type=EST; length=690bp
AAGCTATATTTTCTATGAGCTATATAATCAATTTACTTTCTATATTCTCT
TCTAGAGAATATAGAAGAGAATATAGAAAGTAAAGATAGAAAATCAAGTA
AAGACGGGCTTTTTCAAGCATTATTTTTTGTGTAATGTAACATAGTCATT
TTTTTTTTTTTTTATTTTCAATTAGGAGAGATGGCTGAGTGGATTAAAGC
GTCGGATTGCTAATCCGGTGTACGAGTTCTTCGTACCGAGGGTTCGAATC
CCTCTCTTTCCGTTTCGGGCGATGGCTTGGTATTTTTCAAATTTAACTTT
AGCGAACACTTTTACTTTATTTTTAATAGTAACTGGGAATCAAAAAATCC
TAAGAACGTTTATACGAATAAAGTAAGCAACTCCTTCCTTTTTTATTCTT
CGCGTCCGGGATTACGCCCTGGATCATTAGACAGGAATCCGAAGATGAAG
AGCGAAACAAAGAATATCACTACGGTGTAAACAAAGAGTTTGAGAGTAAG
CATTACACAATCTCCAAATCAGGTTTTTGGGGAAAAGGAAAAAGAGAATA
GATTCTCTATTTTTATACTACATATCCAATTTTGACATCAAGAAATGAAG
TTCTTTTTAGAATTTGATTCTCTAAATAGAAAATCGTTTTCATAAATTAA
ATTCACACAATTAGAATTCTACATTTTGGTTGGCTCTAAT