CV712445

Overview
NameCV712445
Unique NameCV712445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13753 contig Csv1_Contig13753:112..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV712445 vs. ExPASy Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803) GN=slr1780 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.590e-15
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 3 
Query:  249 YYFVVANAKFMLDEEEHFQELLFERLRNYGERSKEQDFWLVIEPKFLDKFPNITKRLRRPA--VALVSTNGPWITFMKLRLDRVLSDSYEAGS--LEEALAS 542
            YY+ +A+ KF+L EEE F+E+L ER R+YGE++KE DFW VI+P FL+       + + P   VA+VSTN  +I ++KLRL+ VL+  +EA S  + + LAS
Sbjct:   31 YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAPEKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131
The following BLAST results are available for this feature:
BLAST of CV712445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC54L_SYNY32.590e-1547.06Ycf54-like protein OS=Synechocystis sp. (strain PC... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G08_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712445 ID=CV712445; Name=CV712445; organism=Citrus sinensis; type=EST; length=715bp
TGTCGACATCAGCAAGCCTAAGCGTAACTGCTGGTATGCCGATTTCTACA
CAACATGGCTCTGCTGGCAGAGGCAGAGCTATAGTTCTATCACTTCCAAG
CAATCATACATTGCCACAGGGACTGGGTCTTGTTTCTGCTCATTCAAACT
TGAAGGGACGCAGAGGAAGCTTCAAGACGGCCGTGGCTTCTGTTGACTCC
AACCAGATTAGTTCCTCCTCTGTTCCTCCTGAAAAGGAAGCAAACAAGTA
TTATTTTGTTGTTGCAAATGCAAAGTTCATGCTGGACGAAGAAGAGCACT
TCCAGGAGCTCTTGTTTGAGCGCCTACGGAACTATGGAGAGCGTAGTAAA
GAGCAGGACTTTTGGTTAGTTATTGAGCCCAAGTTCTTGGATAAGTTCCC
TAACATTACTAAGAGATTGCGCAGACCTGCTGTCGCTCTGGTTTCAACTA
ATGGTCCCTGGATTACGTTTATGAAACTGAGGCTGGACCGGGTTTTATCA
GATAGCTATGAAGCTGGCAGTCTAGAGGAAGCTTTAGCCTCTAATCCTGC
CACTCTCAAGTTTGAGAAGCAAGAGAAGTGGGTGGCACCTTATCCGAAAT
ATGAATTTGGATGGTGGGAGGCCTTCTTGCCTACCGGATCAAAAGGGTCA
AAAGTATAGGGCAACTTTTCCTTTTTTATTTTTTTTTAATCTTTTCTTCT
TAACTCTTGTTAACA
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