CV712443

Overview
NameCV712443
Unique NameCV712443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712443_ssr96 microsatellite CV712443_ssr96:96..107. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2921 contig Csv1_Contig2921:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH1_ARATH (Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.681e-68
Identity = 136/189 (71.96%), Postives = 152/189 (80.42%), Query Frame = 3
Query:  177 TPAGQAVSQPPALIPPSRPFVMQNTT---KVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKP--SQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLG 728
            T     +S+PP+L PPS PFV+ +       SP+E P +    E+ EE   KPKLK LHWDKVRASSDREMVWDHLRSSSFKL+EEMIETLF+  + ++KP  SQTTPR VLP+PN ENRVLDPKK+QNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLK Y D+S  KLG
Sbjct:  545 TTKADTISRPPSLTPPSHPFVIPSENLPVTSSPMETPETVCASEAAEETP-KPKLKALHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQSQTTPRCVLPSPNQENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKAYNDDSPVKLG 732          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH1_ORYSJ (Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.355e-49
Identity = 101/144 (70.14%), Postives = 118/144 (81.94%), Query Frame = 3
Query:  306 EEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQ--TTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDE-SLTKLG 728
            EE   +PKLKPLHWDKVRASSDR MVWD L+SSSF++NEEMIETLFI N  +S P +   T R VLPTP ++N+VLDPKKSQNIAILLRALNV+ E+VC+AL EGN +  G ELLE+LLKMAPTKEEE KL+E+K+E S  KLG
Sbjct:  499 EETTPRPKLKPLHWDKVRASSDRVMVWDQLKSSSFQVNEEMIETLFICNPANSAPPKEPATRRPVLPTPKTDNKVLDPKKSQNIAILLRALNVSKEQVCDALCEGNTENFGAELLETLLKMAPTKEEEIKLREFKEETSPIKLG 642          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH2_ARATH (Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.856e-46
Identity = 102/180 (56.67%), Postives = 127/180 (70.56%), Query Frame = 3
Query:  198 SQPPALIPPSRPFVMQNTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDE---SLTKLG 728
            ++PP   PP  P    +    +     P   ++   + E +KPKLK LHWDKVRASS R MVWD ++S+SF++NEEMIETLF VN P+S+    T   V+ + + ENR LDP+KS NIAILLRALNVT +EVCEAL+EGN+DTLG ELLE LLKMAPTKEEE KLKE KD+   S +K+G
Sbjct:  407 ARPP---PPPPPPPQVSEVPATMSHSLPGDDSDPEKKVETMKPKLKTLHWDKVRASSSRVMVWDQIKSNSFQVNEEMIETLFKVNDPTSR----TRDGVVQSVSQENRFLDPRKSHNIAILLRALNVTADEVCEALIEGNSDTLGPELLECLLKMAPTKEEEDKLKELKDDDDGSPSKIG 579          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH6_ARATH (Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.264e-45
Identity = 110/210 (52.38%), Postives = 131/210 (62.38%), Query Frame = 3
Query:  204 PPALIPP----SRPFVMQNTTKVSPVELPPSSKTEES--------------VEE-----------------EALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLG 728
            PP L PP     RP   Q   KV+  E   +S T  S              VEE                 +  KPKLKPLHWDKVRASSDR  VWD L+SSSF+LNE+ +E LF  N+ SS P +   R+V+P   +ENRVLDPKKSQNIAILLRALNVT EEV EAL +GN ++LG ELLE+L+KMAPTKEEE KL+EY  + ++KLG
Sbjct:  385 PPPLAPPPPPQKRPRDFQMLRKVTNSEATTNSTTSPSRKQAFKTPSPKTKAVEEVNSVSAGSLEKSGDGDTDPSKPKLKPLHWDKVRASSDRATVWDQLKSSSFQLNEDRMEHLFGCNSGSSAPKEPVRRSVIPLAENENRVLDPKKSQNIAILLRALNVTREEVSEALTDGNPESLGAELLETLVKMAPTKEEEIKLREYSGD-VSKLG 593          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH15_ORYSJ (Formin-like protein 15 OS=Oryza sativa subsp. japonica GN=FH15 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.263e-45
Identity = 92/158 (58.23%), Postives = 118/158 (74.68%), Query Frame = 3
Query:  258 VSPVELPPSSKTEESVEEEALKPKLKPLHWDKVR-ASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLG 728
            V P E P  +  EE   + A +PKLKPLHWDKVR ASS R  VWD L++SSF++NEEMIETLF+ N+                 N EN+VLDPKKSQNIAI+LRAL+ T EEVC+ALL+G A++LGTELLE+LLKMAP++EEE KLKE+++++++KLG
Sbjct:  326 VHPEESPARASPEEKAADAAARPKLKPLHWDKVRPASSGRPTVWDQLKASSFRVNEEMIETLFVSNSTRRASKNGVKEANAACCNQENKVLDPKKSQNIAIMLRALDATKEEVCKALLDGQAESLGTELLETLLKMAPSREEEIKLKEFREDAVSKLG 483          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH8_ORYSJ (Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.980e-42
Identity = 103/199 (51.76%), Postives = 136/199 (68.34%), Query Frame = 3
Query:  138 SRQRKQWELPVVSTPAGQAVSQPPALIPPSRPFVMQNTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVN-TPSSKPSQTTPRTV-LPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLG 728
            SR+R    LP    P G  ++ P   +P +    + N    S  E   ++  +    E   +PKLKPLHWDKVRA+SDR MVWD L+SSSF+L+E+MIE LF+ N TP++ P +   +   +P+   E RVLDPKK+QNIAILLRALNVT EEV +ALL+GNA+ LG+ELLE+L+KMAPTKEEE KL++Y  + L+KLG
Sbjct:  401 SRRRLLKPLP----PEGPRIAMP---MPITAATTVDNNGSTSMREGDNAAADDGGSGEP--RPKLKPLHWDKVRATSDRAMVWDQLKSSSFQLDEDMIEALFMNNSTPAAPPREVGRKAAGVPSFRQEERVLDPKKAQNIAILLRALNVTREEVSDALLDGNAECLGSELLETLVKMAPTKEEELKLRDYSGD-LSKLG 589          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH4_ORYSJ (Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.853e-40
Identity = 93/178 (52.25%), Postives = 121/178 (67.98%), Query Frame = 3
Query:  198 SQPPALIPPSRPFVMQNTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTV-LPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLG 728
            ++ P+++ P  P  M  T          S +T      +  +PKLKPLHWDKVR SSDR+MVWD L     KL+E+MIE LF+ N+ +  P    P+ V +P    E RVLDPKK+QNIAILLRALNVT+EEV +ALL+GNA+ LG ELLE+L+KMAPTKEEE KL+++  + L+KLG
Sbjct:  373 AEGPSIVIPRAP-AMAVTKDNDATAATMSVRTRGEAAGDEPRPKLKPLHWDKVRTSSDRDMVWDRL-----KLDEDMIEVLFMNNSTAVAPRMDNPKKVGMPQFKQEERVLDPKKAQNIAILLRALNVTLEEVTDALLDGNAECLGAELLETLVKMAPTKEEELKLRDFTGD-LSKLG 543          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH10_ARATH (Formin-like protein 10 OS=Arabidopsis thaliana GN=FH10 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.405e-32
Identity = 81/198 (40.91%), Postives = 114/198 (57.58%), Query Frame = 3
Query:  144 QRKQWELPVVSTPAGQ----AVSQPPALIPPSRPFVMQNTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKL 725
            Q+++     V+ P  Q    A+ +PP L+PPS+ F++Q + K       P S  E + +    KPKLKPL WDKVR SS R   WD L  +S   N +                Q +    LP  N E++VLDP+KSQN+A+LL  L +T  +VC+AL +G+ D LG ELLESL ++AP++EEE+KL  Y D+S+ KL
Sbjct:  415 QQRESAAAAVTLPPPQRPPPAMPEPPPLVPPSQSFMVQKSGKKLSFSELPQSCGEGTTDRP--KPKLKPLPWDKVRPSSRRTNTWDRLPYNSSNANSK----------------QRSLSCDLPMLNQESKVLDPRKSQNVAVLLTTLKLTTNDVCQALRDGHYDALGVELLESLARVAPSEEEEKKLISYSDDSVIKL 594          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH11_ARATH (Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.683e-31
Identity = 83/181 (45.86%), Postives = 107/181 (59.12%), Query Frame = 3
Query:  174 STPAGQAVSQPPALIPPSRPFVMQ----NTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYK 704
            S P     SQP    PP  P  +Q    N T   P+ L  S +     +   L PKLKPLHWDKVRA+ DR MVWD LR+SSF+L+EEMIE+LF     SS  ++        TP+    +L+PK+ QN  ILL+ALN T +++C AL  G  + L  + LE+L+KM PTKEEE KL+ YK
Sbjct:  416 SFPINVPNSQPRPPPPPPPPQQLQVAGINKTPPPPLSLDFSERRPLGKDGAPL-PKLKPLHWDKVRATPDRTMVWDKLRTSSFELDEEMIESLFGYTMQSSTKNEEGKS---KTPSPGKHLLEPKRLQNFTILLKALNATADQICSAL--GKGEGLCLQQLEALVKMVPTKEEELKLRSYK 590          
BLAST of CV712443 vs. ExPASy Swiss-Prot
Match: FH5_ARATH (Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 81/193 (41.97%), Postives = 115/193 (59.59%), Query Frame = 3
Query:  165 PVVSTPAGQAVSQPPALIPPSRPFVMQNTTKVS--PVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLF---IVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLG 728
            P  + P G    +PP   PP  P   +    +S  P    P S   ++++++A K KLKP  WDKV+A+ +  MVW+ +RS SF+ NEEMIE+LF     +   +    ++ +  LP      ++L+PKK QN++ILLRALN T EEVC+AL EGN   L  E +++LLKMAPT EEE KL+ Y  E + +LG
Sbjct:  389 PPPAPPPGSGGPKPP---PPPGPKGPRPPPPMSLGPKAPRPPSGPADALDDDAPKTKLKPFFWDKVQANPEHSMVWNDIRSGSFQFNEEMIESLFGYAAADKNKNDKKGSSGQAALP---QFVQILEPKKGQNLSILLRALNATTEEVCDALREGN--ELPVEFIQTLLKMAPTPEEELKLRLYCGE-IAQLG 572          
The following BLAST results are available for this feature:
BLAST of CV712443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
FH1_ARATH4.681e-6871.96Formin-like protein 1 OS=Arabidopsis thaliana GN=F... [more]
FH1_ORYSJ6.355e-4970.14Formin-like protein 1 OS=Oryza sativa subsp. japon... [more]
FH2_ARATH3.856e-4656.67Formin-like protein 2 OS=Arabidopsis thaliana GN=F... [more]
FH6_ARATH3.264e-4552.38Formin-like protein 6 OS=Arabidopsis thaliana GN=F... [more]
FH15_ORYSJ4.263e-4558.23Formin-like protein 15 OS=Oryza sativa subsp. japo... [more]
FH8_ORYSJ1.980e-4251.76Formin-like protein 8 OS=Oryza sativa subsp. japon... [more]
FH4_ORYSJ1.853e-4052.25Formin-like protein 4 OS=Oryza sativa subsp. japon... [more]
FH10_ARATH5.405e-3240.91Formin-like protein 10 OS=Arabidopsis thaliana GN=... [more]
FH11_ARATH2.683e-3145.86Formin-like protein 11 OS=Arabidopsis thaliana GN=... [more]
FH5_ARATH2.511e-2941.97Formin-like protein 5 OS=Arabidopsis thaliana GN=F... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G07_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712443 ID=CV712443; Name=CV712443; organism=Citrus sinensis; type=EST; length=728bp
GCCCAGATGAATCACCAAGAATGTTGAATGTTTTTGGTCAAATTTCATCT
CCGGTGAGAACTAATGATGCTTTGGAGCAGCCCATTTCAGTCCCCCCGCC
GCCGCCGCCTCCTCCACCCCCACCTCCGCTGGTGTTGTCTAGACAAAGGA
AGCAATGGGAATTGCCTGTGGTATCAACCCCAGCTGGTCAAGCAGTGTCC
CAGCCACCTGCTTTGATACCACCTTCGAGGCCTTTTGTGATGCAAAACAC
AACTAAAGTCTCCCCCGTTGAATTGCCACCAAGTTCTAAAACTGAGGAGA
GCGTCGAGGAAGAGGCCTTGAAACCAAAGTTAAAACCTTTGCACTGGGAT
AAAGTGAGAGCTAGCTCTGATCGTGAAATGGTGTGGGATCACCTTCGATC
AAGCTCATTCAAATTGAATGAGGAGATGATTGAAACATTGTTTATTGTAA
ATACTCCAAGTTCGAAACCAAGCCAAACAACTCCACGCACGGTTCTTCCT
ACACCCAACTCAGAGAACAGAGTCCTTGATCCCAAAAAGTCGCAAAACAT
TGCAATTTTGCTGAGGGCGCTGAATGTTACCATAGAGGAAGTTTGTGAAG
CACTTCTAGAAGGTAATGCTGATACACTTGGAACTGAACTTCTGGAGAGT
TTATTGAAGATGGCTCCTACCAAAGAAGAAGAACGTAAGTTGAAAGAGTA
CAAAGATGAGTCACTAACGAAGCTCGGT
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