CX043561

Overview
NameCX043561
Unique NameCX043561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043561_ssr100 microsatellite CX043561_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:621..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.577e-67
Identity = 124/131 (94.66%), Postives = 126/131 (96.18%), Query Frame = -1
Query:  373 RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 765
            RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGP IGA  AAFYHQ+ILRAAAIKALGSF S
Sbjct:  153 RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 3.721e-66
Identity = 121/134 (90.30%), Postives = 126/134 (94.03%), Query Frame = -1
Query:  367 NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 768
            N  GGGAN +ADGY+KGT LGAEIIGTFVLVYTVFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDDQWIFWVGPF+GA  AA YHQYILRA+AIKALGSFRSNA
Sbjct:  145 NTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNA 278          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.083e-65
Identity = 118/134 (88.06%), Postives = 126/134 (94.03%), Query Frame = -1
Query:  367 NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 768
            +RYGGGAN LA GY++GTGLGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIYNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  157 DRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.414e-65
Identity = 117/134 (87.31%), Postives = 126/134 (94.03%), Query Frame = -1
Query:  367 NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 768
            NRYGGG N ++DGYNKGT LGAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSFG AVI+N +KAWDDQWI+WVGPF+GA VAA YHQYILR +AIKALGSFRSNA
Sbjct:  154 NRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.018e-65
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = -1
Query:  367 NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 768
            NRYGGGAN LA GY+KGTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N EKAW + WIFWVGPF+GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  157 NRYGGGANTLAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.166e-65
Identity = 115/134 (85.82%), Postives = 125/134 (93.28%), Query Frame = -1
Query:  367 NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 768
            +RYGGGAN LA GY++G GLGAEI+GTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAV+YNK+K WDD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  159 DRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSNA 292          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 2.042e-64
Identity = 117/134 (87.31%), Postives = 124/134 (92.54%), Query Frame = -1
Query:  367 NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 768
            +RYGGGAN LADGYN GTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK K WDD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  150 DRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAA 283          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.667e-64
Identity = 119/132 (90.15%), Postives = 122/132 (92.42%), Query Frame = -1
Query:  370 RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 765
            R GGGAN +ADGY+ GT LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN EKAWDD WIFWVGPF+GA  AA YHQYILRAAAIKAL SFRSN
Sbjct:  144 RLGGGANTVADGYSTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALASFRSN 275          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.667e-64
Identity = 115/133 (86.47%), Postives = 124/133 (93.23%), Query Frame = -1
Query:  370 NRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 768
            N++GGGAN +A GYNKGT  GAE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNK++ WDD WIFWVGPF+GA  AA YHQY+LRAAAIKALGSFRSN
Sbjct:  147 NQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALGSFRSN 279          
BLAST of CX043561 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.483e-64
Identity = 119/133 (89.47%), Postives = 126/133 (94.74%), Query Frame = -1
Query:  367 RYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 765
            RYGGGANEL+DGY+KGTGL AEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK+KAWDDQWIFWVGP IGA +AA YHQY+LRA+A K LGS+RSNA
Sbjct:  157 RYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 288          
The following BLAST results are available for this feature:
BLAST of CX043561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
PIP24_ARATH2.577e-6794.66Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH3.721e-6690.30Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP21_MAIZE1.083e-6588.06Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP27_MAIZE1.414e-6587.31Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP21_ORYSJ7.018e-6588.81Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_MAIZE9.166e-6585.82Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP22_ARATH2.042e-6487.31Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP28_ARATH2.667e-6490.15Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA2.667e-6486.47Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP24_MAIZE3.483e-6489.47Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11H08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11H08-O15-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043561 ID=CX043561; Name=CX043561; organism=Citrus sinensis; type=EST; length=768bp
TTGGGGATTAATTAACATTAACAACATAAATACACCACTTGAAATAAAGA
AAAAGGGAAAGGATAAGAAAAATAAAGAGAAAATAGGATATATAAAAAAC
ACCACCACCACTTATAAACACACCCAAAGAAAAAAAATTAAAATGGGATA
CCAAAATCCACCCTTACACGTAGATAAAGCATAGGCATAAAATGCGTAAT
GTTCAAATATCTACAATTCAATAGCCCTCTAATTCACCTCAAATTCAATG
GCCCTCTAAAGAGCTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGA
CTTGCACTCCTGATCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACA
TCATATTTAAAGCTTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATG
GCTGCTGCCCTGAGAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCC
AATGAATGGTCCAACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCT
TGTTGTAGATCACAGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTT
CCGGTGATGGGGATGGTGGCCAAGTGAACCATAAACACAGCAAACCCAAT
GGGGAGTGGTGCCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAG
GATCAGTGGCAGAGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATC
TCAGCACCCAGTCCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGC
CCCACCTCCATACCTGTT
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