FC871727

Overview
NameFC871727
Unique NameFC871727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6332 contig Csv1_Contig6332:414..1280. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.096e-80
Identity = 137/209 (65.55%), Postives = 160/209 (76.56%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            YYPD  L+ SDEELQ WW+E+R +GH +KKDEPWWPVLKT  DLI ++TTIAWV SGHHAAVNFGQY YGGYFPNRPT  R  +P ED T E  K F E PE  LL+ +P+Q QA  VM+ +DLLSTHSPDEEY+G++ E +W ++PVI AAFE F  K+Q LE +ID+RN N  LKNR GA +V YELLKP SE G TG GVPYSISI
Sbjct:  688 YYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 8.985e-75
Identity = 127/209 (60.77%), Postives = 159/209 (76.08%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            YY     V  DEEL+AWW E+RT GHA+KKDEPWWPV  T ++L++I+T I WV SGHHAAVNFGQY Y GYFPNRPTV R N+P E+   +E K F+ +PE  LL+  P+Q QA+ VM  +D+LS+HSPDEEY+G+  EPAW  +P++KAAFE+F+ +++E E  ID RN+N   KNR GA IVPYELLKPFSEPG TG+G+P SISI
Sbjct:  688 YYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.280e-67
Identity = 116/210 (55.24%), Postives = 149/210 (70.95%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTK-EEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            +YPD   V  DEELQA+WTE+RT GH +KKD PWWP L +P+ L   +TTI WVA+ HHAAVNFGQY +GGYFPNRP++ART +P E+       + FL+ P+ AL  CFP+Q QA  VM V+D+LSTHS DEEYLG E    W  D  ++AA+  F  +++E+E +ID RN +  LKNR GA I+PY+L+KPFS+ G TG G+P S SI
Sbjct:  732 FYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.176e-66
Identity = 115/210 (54.76%), Postives = 150/210 (71.43%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTK-EEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            +YPD   V  DEELQA+WTE+RT GH +KKD PWWP L +P+ L   +TTI WVA+ HHAAVNFGQY +GGYFPNRP++ART +P E+       + FL+ P+ AL  CFP+Q QA  VM V+D+LS+HS DEEYLG E    W  D  ++AA++ F  +++E+E +ID RN +  LKNR GA I+PY+L+KPFS+ G TG G+P S SI
Sbjct:  715 FYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.430e-58
Identity = 110/219 (50.23%), Postives = 144/219 (65.75%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATG----------KGVPYSISI 628
            YYP  + +  DEELQAWWTE+RT GHA+K+DEPWWP L + ++L + + TI WV SGHHAAVNFGQY   GY PNRPT+AR N+P E    ++ + F+E PE  LL  FP+Q+Q+  V+ ++DLLSTHS DEEY+G   EPAW  D VI  AFEEF    +++   +D+ N++ + KNR GA +VPY LL+P       G           G+P SISI
Sbjct:  719 YYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTE-IGGDDMRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.792e-57
Identity = 106/211 (50.24%), Postives = 143/211 (67.77%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYL--GKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            +Y D   + SD ELQAWW EI+  GH +KKDEPWWP L T QDL +I+T + W+ASG HAA+NFGQY +GGY PNRPT+ R  +P E  T  +++ F+  P+ + L   P Q QA  VM V + LSTHSPDEEYL   +E++  W  D  +   F +F+ ++ ++E+ I++RN ++ LKNRTGA + PYELL P S  G TG+G+P SISI
Sbjct:  709 FYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.055e-55
Identity = 101/210 (48.10%), Postives = 141/210 (67.14%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPA-WGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            YY + +L+++D ELQAW++E   VGHA+ +D  WWP L T +DL+ +ITTI W+AS  HAA+NFGQY YGGY PNRP + R  +P  D++  E+ SF+E P+       P+  Q    M V+D LSTHSPDEEY+G+  +P+ W  D  I  AF  F+ ++  +E+ ID RN + + +NR GA ++PYEL+ P SEPG T +GVP S+SI
Sbjct:  719 YYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP--DESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPNSVSI 926          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.908e-55
Identity = 101/210 (48.10%), Postives = 141/210 (67.14%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPA-WGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            YYP+P+L+++D ELQ+W++E   VGHA+ +D  WWP L T  DL+ I+TT+ W+AS  HAA+NFGQY YGGY PNRP + R  +P  D++  E+ SF+  PE       P+  Q    M V+D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E+ I+ RN++ + +NR GA ++PYELL P SEPG T +GVP S+SI
Sbjct:  712 YYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIP--DESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVPNSVSI 919          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.544e-53
Identity = 103/209 (49.28%), Postives = 132/209 (63.16%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            YY     +  D ELQAWW E+R VGH +KK+EPWW  ++TPQ+LI+  TTI W+AS  HAAVNFGQY Y GY PNRPTV+R  +P  +    E++   + P+ A L+   AQ Q L  + +I++LS H+ DE YLG+   P W  D    AAFE F  K+ ++E+ I  RN N  L NRTG    PY LL P SE G TGKG+P S+SI
Sbjct:  654 YYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMP--EPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 860          
BLAST of FC871727 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.667e-53
Identity = 99/209 (47.37%), Postives = 136/209 (65.07%), Query Frame = 2
Query:    2 YYPDPSLVESDEELQAWWTEIRTVGHAEKKDEPWWPVLKTPQDLIEIITTIAWVASGHHAAVNFGQYLYGGYFPNRPTVARTNLPNEDQTKEEWKSFLEKPEAALLRCFPAQFQALTVMLVIDLLSTHSPDEEYLGKEMEPAWGDDPVIKAAFEEFNLKMQELERIIDDRNSNENLKNRTGAAIVPYELLKPFSEPGATGKGVPYSISI 628
            +Y     +++D ELQAWW E+R  GH +KK EPWWP ++T ++L+E  T I WVAS  HAAVNFGQY   GY PNRPT++R  +P E+    E++   + P+   L+   AQ Q L  + +I++LSTHS DE YLG+     W  +     AFE+F  K++E+E+ ID+RN +E LKNRTG   +PY LL P SE G TG+G+P S+SI
Sbjct:  653 FYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKEN--TPEFEELEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIPNSVSI 859          
The following BLAST results are available for this feature:
BLAST of FC871727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LOX2_ARATH1.096e-8065.55Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU8.985e-7560.77Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ5.280e-6755.24Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.176e-6654.76Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU3.430e-5850.23Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH3.792e-5750.24Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH6.055e-5548.10Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH7.908e-5548.10Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOXA_SOLLC2.544e-5349.28Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_ARATH5.667e-5347.37Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3BB03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3BB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871727 ID=FC871727; Name=FC871727; organism=Citrus sinensis; type=EST; length=867bp
CTATTATCCCGATCCAAGCCTTGTAGAGTCTGATGAGGAGCTCCAAGCAT
GGTGGACTGAAATTCGAACCGTGGGACACGCCGAGAAAAAGGATGAACCA
TGGTGGCCTGTCCTGAAAACCCCTCAGGATTTAATTGAAATCATCACAAC
CATCGCTTGGGTTGCATCCGGTCACCATGCAGCTGTGAACTTTGGGCAAT
ATTTATACGGAGGCTATTTCCCTAACAGGCCAACTGTTGCAAGAACCAAC
CTGCCAAATGAAGATCAAACAAAAGAAGAATGGAAATCCTTTCTCGAAAA
ACCTGAAGCTGCACTTTTGCGATGCTTCCCTGCACAGTTTCAAGCTCTTA
CGGTAATGCTCGTTATTGATTTGCTGTCGACTCATTCGCCTGATGAAGAG
TATTTGGGGAAGGAAATGGAGCCGGCATGGGGTGATGACCCAGTTATAAA
GGCTGCATTTGAAGAGTTTAACCTCAAAATGCAGGAGCTTGAAAGGATCA
TTGATGACAGAAATTCGAATGAGAATTTGAAGAACAGAACTGGAGCTGCG
ATTGTTCCATATGAGCTCCTGAAGCCGTTTTCGGAACCTGGCGCGACAGG
AAAAGGAGTTCCCTACAGCATCTCCATCTAGAGTGCACGAAGCTCATTGC
AAATCAAACTTTAAGAAATAAGATGTCATACGTCTTTAATTTAAATAAGC
TGCTTCGCCGGAATTTTTTCCGGCTAGCCAAATACCAAAACTACCAATGA
GCTCATTACACGGTTTTGGTCGTTGATGTTTGTACTTTATGTTGCGTGGG
AGTGGGTCCTAGGAGTCACTTCTAGAATAAATTGTTTGTAGCTCTGTGAG
TATATGATGTGATATAA
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