CV712430
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: AB3F_ARATH (ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 4.155e-91 Identity = 175/289 (60.55%), Postives = 201/289 (69.55%), Query Frame = 2 Query: 32 GGRVQEVDQPIIDYIVNVLXXXXXXXXXXXXXXXXXIGELLVNAGCVSDFDECRLVCGKLNEKFGKHGLVKPQPTVRSLTTPLRMNDGMDE-EAPKKKPEVTDGPLLSXXXXXXXXXXXXXXXXXXXSQYQMHLAEMEAVRAGMPVVCVNHDRHGGPAVKDIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIERTXXXXXXXXXXXXXXXXDFEETTEKSNV----SIDKDAIAQRL 883 G R Q+VD+PI+DYI+NVL +GELLV A CVSDF+ECRLVC KL++KFGKHGLVKP PTVRSL P+RMNDGMD+ KKKPE DGPLL+ QYQ H+AEMEA +AGMP V VNHD GG A++DIHMDNFNVSVGGRDLIVDGS+TLSFGRHYGLVGRNGTGKTTFLR+MA+HAI+GIP NCQILHVEQEV GD TTALQCVLNTDIERT + EE T K + +++ D ++QRL Sbjct: 14 GRRAQDVDEPIMDYIINVLADEDFDFGEEGEGAFDAVGELLVAAECVSDFEECRLVCSKLSDKFGKHGLVKPTPTVRSLAMPVRMNDGMDDGPVKKKKPEPVDGPLLTERDLAKIERRKKKDDRQRELQYQQHVAEMEAAKAGMPTVSVNHDTGGGSAIRDIHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEGIPTNCQILHVEQEVVGDKTTALQCVLNTDIERT--KLLEEEIQILAKQRETEEPTAKDGMPTKDTVEGDLMSQRL 300
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: GCN20_YEAST (Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17 Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 506 KDIHMDNFNVSVG-GRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 KDIH+D F++ VG G+ ++ + LTLSFG YGLVG+NG GK+T LR ++ ++ +P + ILHVEQE+ GDDT ALQ VL+ D+ R Sbjct: 197 KDIHIDTFDLYVGDGQRILSNAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELN-VPKHVSILHVEQELRGDDTKALQSVLDADVWR 283
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF4_DICDI (ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17 Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 2 Query: 509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 DI DN +SV GR L+ + SLTL++G+ YG VGRNG GK+T ++ +A+ I P+ ++L+VEQEV GDDTT L CVL D ER Sbjct: 603 DIKFDNLILSVPGRILLNNASLTLAYGQKYGFVGRNGIGKSTLVKKIAMRDEITIAPHLRVLYVEQEVTGDDTTPLDCVLAADEER 688
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_MOUSE (ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17 Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2 Query: 509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 D+ ++NF+VS G R L+ + L++GR YGLVGRNG GKTT L+ +A ++ +P + +LHVEQEV GDDT ALQ VL +D R Sbjct: 177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAGDDTPALQSVLESDTVR 261
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_RAT (ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17 Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2 Query: 509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 D+ ++NF+VS G R L+ + L++GR YGLVGRNG GKTT L+ +A ++ +P + +LHVEQEV GDDT ALQ VL +D R Sbjct: 177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAGDDTPALQSVLESDTIR 261
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_HUMAN (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17 Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2 Query: 509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 D+ ++NF+VS G R L+ + L++GR YGLVGRNG GKTT L+ +A ++ +P + +LHVEQEV GDDT ALQ VL +D R Sbjct: 177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAGDDTPALQSVLESDSVR 261
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_PONAB (ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16 Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 2 Query: 509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 D+ ++NF+VS G R L+ + L++GR YGLVGRNG GKTT L+ +A ++ +P + +LHVEQEV DDT ALQ VL +D R Sbjct: 177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAEDDTPALQSVLESDSVR 261
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: YB89_SCHPO (Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe GN=SPBC29A3.09c PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16 Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 2 Query: 506 KDIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 KDI +D +++ G ++ SLTL+ GR YGL GRNG GK+T LR ++ I IP + ILHVEQE+ GDDT ALQ VL+ D+ R Sbjct: 181 KDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREI-AIPTHITILHVEQEMTGDDTPALQSVLDADVWR 266
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF1_RAT (ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.277e-15 Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 DI ++ F++S G++L V+ L + GR YGLVG NG GKTT L+H+A A+ IPPN +L EQEV D+T A+Q VL D +R Sbjct: 297 DIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRAL-SIPPNIDVLLCEQEVVADETPAVQAVLRADTKR 381
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF1_PIG (ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.277e-15 Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 2 Query: 509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766 DI ++ F++S G++L V+ L + GR YGLVG NG GKTT L+H+A A+ IPPN +L EQEV D+T A+Q VL D +R Sbjct: 265 DIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRAL-SIPPNIDVLLCEQEVVADETPAVQAVLRADTKR 349 The following BLAST results are available for this feature:
BLAST of CV712430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712430 ID=CV712430; Name=CV712430; organism=Citrus sinensis; type=EST; length=884bpback to top |