CV712430

Overview
NameCV712430
Unique NameCV712430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712430_ssr466 microsatellite CV712430_ssr466:466..475. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: AB3F_ARATH (ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 4.155e-91
Identity = 175/289 (60.55%), Postives = 201/289 (69.55%), Query Frame = 2
Query:   32 GGRVQEVDQPIIDYIVNVLXXXXXXXXXXXXXXXXXIGELLVNAGCVSDFDECRLVCGKLNEKFGKHGLVKPQPTVRSLTTPLRMNDGMDE-EAPKKKPEVTDGPLLSXXXXXXXXXXXXXXXXXXXSQYQMHLAEMEAVRAGMPVVCVNHDRHGGPAVKDIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIERTXXXXXXXXXXXXXXXXDFEETTEKSNV----SIDKDAIAQRL 883
            G R Q+VD+PI+DYI+NVL                 +GELLV A CVSDF+ECRLVC KL++KFGKHGLVKP PTVRSL  P+RMNDGMD+    KKKPE  DGPLL+                    QYQ H+AEMEA +AGMP V VNHD  GG A++DIHMDNFNVSVGGRDLIVDGS+TLSFGRHYGLVGRNGTGKTTFLR+MA+HAI+GIP NCQILHVEQEV GD TTALQCVLNTDIERT                + EE T K  +    +++ D ++QRL
Sbjct:   14 GRRAQDVDEPIMDYIINVLADEDFDFGEEGEGAFDAVGELLVAAECVSDFEECRLVCSKLSDKFGKHGLVKPTPTVRSLAMPVRMNDGMDDGPVKKKKPEPVDGPLLTERDLAKIERRKKKDDRQRELQYQQHVAEMEAAKAGMPTVSVNHDTGGGSAIRDIHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEGIPTNCQILHVEQEVVGDKTTALQCVLNTDIERT--KLLEEEIQILAKQRETEEPTAKDGMPTKDTVEGDLMSQRL 300          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: GCN20_YEAST (Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.045e-17
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  506 KDIHMDNFNVSVG-GRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            KDIH+D F++ VG G+ ++ +  LTLSFG  YGLVG+NG GK+T LR ++   ++ +P +  ILHVEQE+ GDDT ALQ VL+ D+ R
Sbjct:  197 KDIHIDTFDLYVGDGQRILSNAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELN-VPKHVSILHVEQELRGDDTKALQSVLDADVWR 283          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF4_DICDI (ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 2
Query:  509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            DI  DN  +SV GR L+ + SLTL++G+ YG VGRNG GK+T ++ +A+     I P+ ++L+VEQEV GDDTT L CVL  D ER
Sbjct:  603 DIKFDNLILSVPGRILLNNASLTLAYGQKYGFVGRNGIGKSTLVKKIAMRDEITIAPHLRVLYVEQEVTGDDTTPLDCVLAADEER 688          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_MOUSE (ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2
Query:  509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            D+ ++NF+VS G R L+    + L++GR YGLVGRNG GKTT L+ +A  ++  +P +  +LHVEQEV GDDT ALQ VL +D  R
Sbjct:  177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAGDDTPALQSVLESDTVR 261          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_RAT (ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2
Query:  509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            D+ ++NF+VS G R L+    + L++GR YGLVGRNG GKTT L+ +A  ++  +P +  +LHVEQEV GDDT ALQ VL +D  R
Sbjct:  177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAGDDTPALQSVLESDTIR 261          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_HUMAN (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2
Query:  509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            D+ ++NF+VS G R L+    + L++GR YGLVGRNG GKTT L+ +A  ++  +P +  +LHVEQEV GDDT ALQ VL +D  R
Sbjct:  177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAGDDTPALQSVLESDSVR 261          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF3_PONAB (ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            D+ ++NF+VS G R L+    + L++GR YGLVGRNG GKTT L+ +A  ++  +P +  +LHVEQEV  DDT ALQ VL +D  R
Sbjct:  177 DVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSL-RVPAHISLLHVEQEVAEDDTPALQSVLESDSVR 261          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: YB89_SCHPO (Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe GN=SPBC29A3.09c PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  506 KDIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            KDI +D  +++  G  ++   SLTL+ GR YGL GRNG GK+T LR ++   I  IP +  ILHVEQE+ GDDT ALQ VL+ D+ R
Sbjct:  181 KDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREI-AIPTHITILHVEQEMTGDDTPALQSVLDADVWR 266          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF1_RAT (ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.277e-15
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            DI ++ F++S  G++L V+  L +  GR YGLVG NG GKTT L+H+A  A+  IPPN  +L  EQEV  D+T A+Q VL  D +R
Sbjct:  297 DIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRAL-SIPPNIDVLLCEQEVVADETPAVQAVLRADTKR 381          
BLAST of CV712430 vs. ExPASy Swiss-Prot
Match: ABCF1_PIG (ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.277e-15
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  509 DIHMDNFNVSVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMALHAIDGIPPNCQILHVEQEVEGDDTTALQCVLNTDIER 766
            DI ++ F++S  G++L V+  L +  GR YGLVG NG GKTT L+H+A  A+  IPPN  +L  EQEV  D+T A+Q VL  D +R
Sbjct:  265 DIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRAL-SIPPNIDVLLCEQEVVADETPAVQAVLRADTKR 349          
The following BLAST results are available for this feature:
BLAST of CV712430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AB3F_ARATH4.155e-9160.55ABC transporter F family member 3 OS=Arabidopsis t... [more]
GCN20_YEAST1.045e-1752.27Protein GCN20 OS=Saccharomyces cerevisiae GN=GCN20... [more]
ABCF4_DICDI3.040e-1752.33ABC transporter F family member 4 OS=Dictyostelium... [more]
ABCF3_MOUSE3.040e-1751.16ATP-binding cassette sub-family F member 3 OS=Mus ... [more]
ABCF3_RAT3.971e-1751.16ATP-binding cassette sub-family F member 3 OS=Ratt... [more]
ABCF3_HUMAN3.971e-1751.16ATP-binding cassette sub-family F member 3 OS=Homo... [more]
ABCF3_PONAB3.361e-1650.00ATP-binding cassette sub-family F member 3 OS=Pong... [more]
YB89_SCHPO5.733e-1650.57Uncharacterized ABC transporter ATP-binding protei... [more]
ABCF1_RAT1.277e-1548.84ATP-binding cassette sub-family F member 1 OS=Ratt... [more]
ABCF1_PIG1.277e-1548.84ATP-binding cassette sub-family F member 1 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001G01_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712430 ID=CV712430; Name=CV712430; organism=Citrus sinensis; type=EST; length=884bp
GTTGCGAGCTCAGTTGTTCTCGACGTACTGGGGAGGGAGAGTCCAGGAGG
TAGACCAGCCGATTATTGATTACATCGTCAACGTCCTCGCCGATGAGGAC
TTCGATTTTGGCGAGGAAGGCGAGGGCGCGTTCGACGCCATCGGCGAGCT
CCTCGTCAACGCTGGATGCGTATCCGACTTCGACGAATGCCGCCTGGTTT
GTGGTAAGTTGAATGAGAAGTTTGGAAAGCACGGGTTGGTAAAGCCGCAA
CCAACTGTGCGCAGCCTCACGACGCCATTGAGAATGAATGATGGAATGGA
TGAGGAAGCTCCGAAGAAGAAGCCTGAGGTGACTGATGGTCCCTTGCTGT
CTGAACGTGATAGAGCCAAGATAGAGAGGAAAAAGAGGAAGGAGGAACGC
CAACGAGAGTCGCAATACCAAATGCATCTGGCAGAGATGGAAGCAGTTAG
AGCTGGAATGCCTGTTGTGTGTGTGAATCATGATAGACATGGTGGACCTG
CCGTGAAGGATATACATATGGACAACTTCAATGTTTCTGTAGGTGGACGT
GATCTTATCGTTGATGGTTCACTCACACTATCTTTTGGAAGGCATTATGG
GCTTGTCGGGAGAAACGGTACTGGGAAAACAACTTTCCTCAGGCACATGG
CTCTGCATGCTATTGATGGTATTCCTCCAAATTGCCAGATATTACATGTT
GAGCAAGAAGTGGAAGGTGATGACACAACAGCCTTGCAATGCGTTCTTAA
CACTGATATTGAAAGAACTCAGCTTTTGGAAGAAGAAGCTCGTCTGCTGG
CACTGCAGAGAGAATTGGATTTTGAGGAGACTACTGAAAAGAGCAATGTT
TCAATTGACAAAGATGCTATTGCTCAAAGGCTTC
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