CV712427

Overview
NameCV712427
Unique NameCV712427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11358 contig Csv1_Contig11358:62..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV712427 vs. ExPASy Swiss-Prot
Match: IN80B_HUMAN (INO80 complex subunit B OS=Homo sapiens GN=INO80B PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = -3 
Query:  281 EQQLKRAEALQRRRMQVEKAARESEAEAIRKILGQDSNXXXXXXXXXXXXXELAQEKAANAMVLASDTIRWTMGPSGTTVTFPSEVGLPSLFDHKPS-SYPPPREKCAAPSCTNPYKYRDSKSKLPLCSLQCYKAINEKM 697
            E  LKR E  ++RR+Q  + A E + + I ++    +                  E+        +  +R+  G  G+T++FP  V  P+    +PS S PPPR  C+ P C +P +Y  S++   LCSLQCY+ IN +M
Sbjct:  211 EMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAATSGRGGRGGARG------ERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPR--CSVPGCPHPRRYACSRTGQALCSLQCYR-INLQM 341
The following BLAST results are available for this feature:
BLAST of CV712427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IN80B_HUMAN3.996e-1130.71INO80 complex subunit B OS=Homo sapiens GN=INO80B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F23_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712427 ID=CV712427; Name=CV712427; organism=Citrus sinensis; type=EST; length=726bp
ATTATACAACATTTTACATATACAAAGCATTTGAGATTTTATTTCTCAGA
CAAACAACAGTTGTTTCAGGTTTTTCCAGGCGGCACAGCTGCAGGTGCCG
GGATATTGAGATCAATGTAGACGCTCTGAACCTTACCATACATGTAATGG
TGCCAAGCAGCTGCTTACGATGCTTGTATAGTTGTATGTATCACATGAGT
AAGTAGGCTCGATCAACAGTTTATTTGCGTGGCCAAAAGCAAACGAAGTT
ACGAGATAATTAACAGGCAGATACTGGAGGCATCTTTTCATTTATAGCCT
TGTAGCATTGGAGGCTGCAGAGAGGAAGTTTGGACTTGGAATCGCGATAC
TTGTAAGGATTTGTACAAGATGGAGCAGCGCATTTTTCTCGGGGAGGAGG
GTAGCTGCTAGGTTTATGATCAAAAAGACTTGGCAAGCCAACCTCGCTGG
GGAATGTTACAGTGGTTCCTGAGGGACCCATGGTCCATCTAATGGTGTCT
GATGCAAGTACCATAGCATTTGCAGCTTTCTCCTGTGCCAATTCCTCTTG
TCGTTTCTTCATTTTCTCCTCCCTCTTTTTTCTGTTTGAATCTTGGCCTA
GTATTTTCCTGATTGCCTCGGCCTCAGATTCCCTTGCTGCCTTCTCCACT
TGCATCCTTCGTCTCTGAAGAGCTTCTGCTCTTTTCAGTTGCTGTTCCAC
TTCAGACAATTTCTCCTTTTGCTTTT
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