CV712412

Overview
NameCV712412
Unique NameCV712412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2920 contig Csv1_Contig2920:1..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV712412 vs. ExPASy Swiss-Prot
Match: WNK1_ARATH (Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 54/185 (29.19%), Postives = 86/185 (46.49%), Query Frame = 2 
Query:   23 HNCASN----GCLPDYILSDGSGAKNLQVLQCSKDGCAAIHGRFEEITYQVDGAEQCAPEGADQAASPQSAVVHYANIWA---QHEGPVLSSQGSRDIHCDEEHKTLNQSSYGAEEKIINMDSQSKCRERNCFSMNSAMDYGLLDD----YENEIRQELRWLKAKYQIQLRELRDQQLGVKYKSS 544
            +NC SN    G + D++ ++        V+QC ++GC   HGRFEEIT +                      V    +W    Q E   LSS  S   H +EE +   +  Y   E + + ++ ++    +     S M     D+     EN+++QELRWLKAK QI+LR+++D+QL  ++  S
Sbjct:  489 NNCVSNRTSMGSVMDFLRTNPGA----NVIQCCRNGCGETHGRFEEITIR-------------------ETEVRLRELWKLQQQQESRELSSIDSGHNHSEEEEE--EEVLYEDPENMFSCEAGNEINHISGSGSFSFMPSKYCDEPSEKTENQVQQELRWLKAKCQIELRDIQDEQLKTRWPES 648
The following BLAST results are available for this feature:
BLAST of CV712412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WNK1_ARATH8.086e-1229.19Serine/threonine-protein kinase WNK1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F16_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712412 ID=CV712412; Name=CV712412; organism=Citrus sinensis; type=EST; length=855bp
ACATTCGGCTCTAGTTTCTGGTCACAATTGTGCTTCAAATGGTTGCTTAC
CAGATTATATTTTATCAGATGGGTCAGGAGCCAAGAACCTTCAGGTTCTT
CAGTGTTCTAAAGATGGATGTGCTGCCATACATGGCCGATTTGAAGAGAT
CACATATCAAGTTGACGGGGCAGAACAATGTGCTCCAGAAGGTGCAGACC
AGGCTGCATCACCACAATCGGCTGTTGTTCACTATGCCAATATCTGGGCT
CAGCATGAGGGACCAGTGTTAAGTTCACAGGGATCCAGAGACATACACTG
CGATGAGGAGCACAAAACATTGAACCAGTCAAGTTATGGAGCAGAGGAGA
AGATCATAAATATGGATAGTCAGAGTAAATGCCGTGAAAGAAACTGTTTC
TCCATGAATTCAGCAATGGATTACGGTCTCTTGGATGATTATGAAAATGA
AATTAGGCAAGAGCTAAGGTGGCTTAAAGCAAAGTATCAAATACAGCTGA
GGGAGCTTAGAGACCAACAACTCGGTGTCAAATACAAATCTTCAAGCTTA
ACATTGATAACCGATGACAAAACTCGAGCATCAGACGACAAAGTTTCTCC
TTCTTCAGTTTTACCTGAACCCGAAAGCAATAGACCTCCACAAAGAACAA
TAGCTCATAGGCCTACCAAGCACCTCACATCATGTTTACCAATAGGTGAT
GAGAAGAAATGTGGCAATGTGGCCAATCAAAGGGTACACAGTTTTGAGCA
AATGAATTGGCCTTGTAGCCCGGAGCAAATGGTCACTGCAAAGAGTTACT
ATACTCCTTTACTCCCACACTCCCTTCACCGGGCAACTTCTCTTCCAGTT
GATTC
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