CV712410

Overview
NameCV712410
Unique NameCV712410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV712410 vs. ExPASy Swiss-Prot
Match: ROGF1_ARATH (Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 71/161 (44.10%), Postives = 109/161 (67.70%), Query Frame = 3 
Query:   18 VPTIIKDVLPKSGKTSLGEELYKVLTAESSSSGEMINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPVR-TSWSF-IKDPISELDKIEFLLERAEALIQQLKNRYPNLPQTFLDATKIQYGKDVGHSILEAYSRVLANLAFSILSRIGDILQED 494
            +P    + LPKSGK  LGE +Y+ LTA   S   +++ L+L SEH  LE  N++EAAV  W+++   +   ++ ++ +SW   +K  +++ ++ +FL++RAE L+Q L+ R+P LPQT LD  KIQY KDVG SILE+YSRV+ ++AF+I +RI D+L  D
Sbjct:  292 IPDPYLETLPKSGKECLGEIIYQYLTANKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNERNDFLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVD 452
[Close]
BLAST of CV712410 vs. ExPASy Swiss-Prot
Match: ROGF2_ARATH (Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.382e-26
Identity = 68/163 (41.72%), Postives = 101/163 (61.96%), Query Frame = 3 
Query:   18 VPTIIKDVLPKSGKTSLGEELYKVLTAESSSSGE-MINFLNLKSEHSALEAINKLEAAVFTWKERISEQASGKSPVRTSWSFIKDPIS---ELDKIEFLLERAEALIQQLKNRYPNLPQTFLDATKIQYGKDVGHSILEAYSRVLANLAFSILSRIGDILQED 494
            +P      LPKSGK S G+ +Y+ +T+    S E +++ L + SEH AL+  +++EA+++TW+ +     S     ++SW+ +KD +S     DK   L ERAE+L+  LK RYP L QT LD  KI   KDVG ++LE+YSRVL  LAF+I++ I D+L  D
Sbjct:  321 IPDSYMATLPKSGKASTGDAIYRHMTSSGRFSPEKLLDRLKIVSEHEALQLADRVEASMYTWRRKACLNNS-----KSSWNMVKDLMSITERSDKNYVLAERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYVD 478
The following BLAST results are available for this feature:
BLAST of CV712410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ROGF1_ARATH7.035e-3244.10Rop guanine nucleotide exchange factor 1 OS=Arabid... [more]
ROGF2_ARATH3.382e-2641.72Rop guanine nucleotide exchange factor 2 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001F14_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712410 ID=CV712410; Name=CV712410; organism=Citrus sinensis; type=EST; length=854bp
CCCTTTTGAAATGCCTGGTGCCAACCATTATCAAGGATGTACTTCCCAAG
TCTGGAAAGACAAGTCTTGGAGAAGAACTGTACAAGGTCTTGACTGCTGA
ATCAAGTTCTTCTGGCGAAATGATCAATTTCCTCAATTTAAAATCTGAAC
ACAGTGCACTTGAAGCCATTAACAAGTTAGAAGCTGCTGTATTTACGTGG
AAAGAAAGAATTTCTGAACAAGCTAGTGGTAAATCCCCCGTCCGAACATC
ATGGTCCTTCATTAAAGACCCTATATCAGAACTGGATAAGATAGAGTTCC
TATTGGAACGAGCAGAAGCCCTCATACAGCAGCTAAAGAACAGATATCCC
AACCTTCCTCAAACATTTCTCGATGCCACAAAAATCCAATACGGCAAGGA
TGTTGGGCATTCAATACTGGAAGCATACTCCCGGGTTCTTGCAAACTTGG
CTTTCAGCATACTGTCTAGGATAGGAGACATTCTACAAGAAGATGCATTG
AGCAATCCCAATTCACCTGTGGCAAAATGTTGCACTCCAGGTTCAAAAAT
GAATGATGATAATATGGATCAGATTCAGATGCCATGGCTTCGTCTACGTT
CAAGGCACTCGCTCATTGATCAGATGAATAAAGCAGACGGAAAGTACTTT
ACTTCAGATGCAAGTAGCTGTTCTACTTCGGAAACTTCAAACAGTGAAGC
TAAATCAAGCTCTGTGAATTCGACACCAAGTGTGAATCGTGTATGGTGTG
TTAGTAGTAGAAAAGAGGCTTGTATAAGCTTGTCCCCTGGAAATTCTCCA
TGACGAATAAGGGATTATTGCTTTTTGACATTGTAAATGCTGCAACCTTT
TATT
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