CV712406

Overview
NameCV712406
Unique NameCV712406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length819
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6201 contig Csv1_Contig6201:91..909. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_CITSI (30S ribosomal protein S15, chloroplastic OS=Citrus sinensis GN=rps15 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.732e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR
Sbjct:    1 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_LIRTU (30S ribosomal protein S15, chloroplastic OS=Liriodendron tulipifera GN=rps15 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.088e-34
Identity = 76/90 (84.44%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVKN+FISV  QE+KEKN GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +L+IRE K R
Sbjct:    1 MVKNSFISVIPQEEKEKNKGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIGRLDIREPKTR 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_PLAOC (30S ribosomal protein S15, chloroplastic OS=Platanus occidentalis GN=rps15 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.054e-34
Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVKNAFISV  QE+KE+N GS EFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKN+VRYKELIS+L+IRE K R
Sbjct:    1 MVKNAFISVISQEEKEENKGSAEFQVFNFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNKVRYKELISQLDIREPKIR 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_EUCGG (30S ribosomal protein S15, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps15 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.212e-34
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 2
Query:  488 MVKNAFISVRVQEK-KEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVKN+FISV  QE+ KE+N GS+EFQVFRFTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLL+YLSKKNR+RYKELIS+L+IRESK R
Sbjct:    1 MVKNSFISVISQEEEKEENRGSIEFQVFRFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLSYLSKKNRIRYKELISQLDIRESKTR 91          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_DRIGR (30S ribosomal protein S15, chloroplastic OS=Drimys granadensis GN=rps15 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 74/90 (82.22%), Postives = 78/90 (86.67%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVKN FISV  QE+KEKN GSVEFQVF FTN IRRLT+HLE HRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +L+IRE K R
Sbjct:    1 MVKNLFISVIPQEEKEKNKGSVEFQVFNFTNKIRRLTAHLEFHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIGQLDIREPKTR 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_LOBMA (30S ribosomal protein S15, chloroplastic OS=Lobularia maritima GN=rps15 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.501e-33
Identity = 75/90 (83.33%), Postives = 79/90 (87.78%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            M+KNAFIS   QEKKE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +LNIRE K R
Sbjct:    1 MIKNAFISF--QEKKEESKGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIKQLNIRELKTR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_AETGR (30S ribosomal protein S15, chloroplastic OS=Aethionema grandiflora GN=rps15 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.572e-33
Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            M+KNAFIS+  QEKKE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLL YLSKKNRVRYK+LI+KLNIRE K R
Sbjct:    1 MIKNAFISL--QEKKEESRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLVYLSKKNRVRYKDLINKLNIRELKTR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_MANES (30S ribosomal protein S15, chloroplastic OS=Manihot esculenta GN=rps15 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.799e-33
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            MVKN+FISV  QE+K++N GSVEFQ+  FTN IRRLTSH ELHRKDY SQRGLRKIL KRQRLL+YL+KKNRVRYKELIS+L+IRESK R
Sbjct:    1 MVKNSFISVISQEEKDENKGSVEFQIVSFTNKIRRLTSHFELHRKDYLSQRGLRKILGKRQRLLSYLAKKNRVRYKELISRLDIRESKTR 90          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_BARVE (30S ribosomal protein S15, chloroplastic OS=Barbarea verna GN=rps15 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.799e-33
Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            M+KNAFIS   QE+KE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI++LNIRE K R
Sbjct:    1 MIKNAFISF--QEQKEESKGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELINQLNIRELKTR 88          
BLAST of CV712406 vs. ExPASy Swiss-Prot
Match: RR15_OLIPU (30S ribosomal protein S15, chloroplastic OS=Olimarabidopsis pumila GN=rps15 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.019e-32
Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  488 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 757
            M+KNAFIS   QE+KE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI++LNIRE K R
Sbjct:    1 MIKNAFISF--QEQKEESRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELINQLNIRELKTR 88          
The following BLAST results are available for this feature:
BLAST of CV712406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
RR15_CITSI3.732e-43100.0030S ribosomal protein S15, chloroplastic OS=Citrus... [more]
RR15_LIRTU1.088e-3484.4430S ribosomal protein S15, chloroplastic OS=Liriod... [more]
RR15_PLAOC7.054e-3483.3330S ribosomal protein S15, chloroplastic OS=Platan... [more]
RR15_EUCGG9.212e-3482.4230S ribosomal protein S15, chloroplastic OS=Eucaly... [more]
RR15_DRIGR1.203e-3382.2230S ribosomal protein S15, chloroplastic OS=Drimys... [more]
RR15_LOBMA3.501e-3383.3330S ribosomal protein S15, chloroplastic OS=Lobula... [more]
RR15_AETGR4.572e-3382.2230S ribosomal protein S15, chloroplastic OS=Aethio... [more]
RR15_MANES7.799e-3378.8930S ribosomal protein S15, chloroplastic OS=Maniho... [more]
RR15_BARVE7.799e-3382.2230S ribosomal protein S15, chloroplastic OS=Barbar... [more]
RR15_OLIPU1.019e-3282.2230S ribosomal protein S15, chloroplastic OS=Olimar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001F12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712406 ID=CV712406; Name=CV712406; organism=Citrus sinensis; type=EST; length=819bp
TTATTTGGGCCAATTCTCGATTAGAAGATTTAATTTGTATGAATCGGTAT
TGGTTTAATACCAATAATGGGAGTCGTTTCAGTATGGTAAGGGTCCATAT
GTATCCACGATTGAAAATTCGTTAATAGTGTGCTTTTCCTATCTATCATG
TCCCATTTTGGGATATGAAAACAAAGAAATGTATACATGTCTTGTCTTCC
ATTCCAGTCTGATACAAGATACCAAATTAATGGCGAACATTTTAATTAGA
TCCATAAATGAATCAAGAAACTCTTTTTTTTAGGTCCAAATTTTTCTCTT
TTGCCGAAATATCCATCCTTTTAGATGCCTAATCAAATTGAAAATTGGAT
TGATTATTGATATTGATTTTCTAGCAAGTTCATAACGAACTTAAGATTAT
TGTGTATATCAAATTGAAGTAACTAGTATTATTATTACTGATCAGTAAAA
TTCATCTTAAAAAAGGAAGGGGGAGGGGTTTCGTTTTATGGTAAAAAATG
CATTCATCTCAGTTAGGGTTCAAGAAAAAAAAGAAAAAAACAGCGGATCG
GTTGAATTTCAAGTATTTCGTTTCACCAACACGATCCGGAGACTTACTTC
ACATTTAGAATTGCACAGAAAAGACTATTCATCTCAAAGGGGTCTACGTA
AAATTTTGGAAAAACGCCAACGTCTACTAGCTTATTTGTCAAAGAAAAAT
AGAGTACGTTATAAAGAATTAATTAGTAAGTTGAATATCCGGGAGTCAAA
AAATCGTTAATTTGAAATTTGAAAAACAATTTCGAATTATTTGATTTTGA
CTGTTGATGAACTTCTTGT
back to top