CV712403

Overview
NameCV712403
Unique NameCV712403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: PKHA8_DANRE (Pleckstrin homology domain-containing family A member 8 OS=Danio rerio GN=plekha8 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.439e-19
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 1
Query:   13 VKSEQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 456
            +  E   + T+ FL+ C  I+PVLDK G  + + VK D  GNI +++ K +S+PE +  L S+V  EV+ + A+  +S T  LLWL R + FL E    +       +     ++Y KTL+++HGW+    F +A++ AP  + FM  +
Sbjct:  353 ILEEDSGIPTQAFLDSCYAIVPVLDKLGPTVFAPVKIDFVGNIKKIQQKVVSDPESFPTLQSIVLHEVKTEVAQVRNSATEALLWLKRGLKFLKEFLSEINTGVK-DVQGALYNAYGKTLRQYHGWVVRGVFALALRAAPSYEGFMAAL 500          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: PKHA8_MOUSE (Pleckstrin homology domain-containing family A member 8 OS=Mus musculus GN=Plekha8 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.888e-19
Identity = 50/146 (34.25%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   22 EQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 456
            E   + T+ FL  C  ++PVLDK G  + + VK D+ GNI ++  KY++N E++  L  +V  EVEA  A+  +S T  LLWL R + FL + F   + + +  +     ++Y KTL++ HGW+    F +A++ AP  + F+  +
Sbjct:  326 EDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFL-KGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYEDFVAAL 470          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: PKHA8_HUMAN (Pleckstrin homology domain-containing family A member 8 OS=Homo sapiens GN=PLEKHA8 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.877e-18
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   22 EQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 456
            E   + T+ FL  C  ++PVLDK G  + + VK D+ GNI ++  KY++N E++  L  +V  EVEA  A+  +S T  LLWL R + FL + F   + + +  +     ++Y KTL++ HGW+    F +A++  P  + F+  +
Sbjct:  326 EDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFL-KGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRATPSYEDFVAAL 470          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: PKHA9_HUMAN (Protein PLEKHA9 OS=Homo sapiens GN=PLEKHA9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.181e-17
Identity = 48/146 (32.88%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   22 EQGEMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI 456
            E   + T+ FL  C  ++PVLDK G  + + VK D+  NI ++  KY++N E++  L  +V  EVEA  A+  +S T  LLWL R + FL + F   + + +  +     ++Y KTL++ HGW+    F +A++  P  + F+  +
Sbjct:  210 EDSGIPTEAFLASCCAVVPVLDKLGPTVFAPVKMDLVENIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFL-KGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRATPSYEDFVAAL 354          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: GLTP_DANRE (Glycolipid transfer protein OS=Danio rerio GN=gltp PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   40 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQVC----TDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 483
            T+PFLE    + P  D  G+A+ S +K+DI GNIT+++  Y SNP ++K L  ++  E E   A+      T  L+WL R + F+  L ++L+    D   P +     T +Y   LKK+HGWI    F  A+  AP R  F+  +    +V  +
Sbjct:   20 TRPFLEAVSHLPPFFDCLGSAVFSPIKADIAGNITKIKAVYDSNPTRFKTLQQILEAEKEMHGAEWPKVGATLALMWLKRGLRFIQVLLQSLVDGDKDDNNPNLIKVNVTKAYEMALKKYHGWIVQKLFQAALYAAPYRSDFLRALSKGREVKDE 174          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: GLTP_PIG (Glycolipid transfer protein OS=Sus scrofa GN=GLTP PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   40 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 483
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: GLTP_PANTR (Glycolipid transfer protein OS=Pan troglodytes GN=GLTP PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   40 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 483
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: GLTP_HUMAN (Glycolipid transfer protein OS=Homo sapiens GN=GLTP PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   40 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 483
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: GLTP_BOVIN (Glycolipid transfer protein OS=Bos taurus GN=GLTP PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 46/155 (29.68%), Postives = 78/155 (50.32%), Query Frame = 1
Query:   40 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 483
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y +NP K++ L +++  E E   A+      T  L+WL R + F+    +++     D   P +     T +Y   LKK+HGWI    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174          
BLAST of CV712403 vs. ExPASy Swiss-Prot
Match: GLTP_RAT (Glycolipid transfer protein OS=Rattus norvegicus GN=GLTP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 44/155 (28.39%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   40 TKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSNPEKYKNLYSMVGEEVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL-AHPDWTMPQV----CTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 483
            T PFLE    + P  D  G+ + + +K+DI GNIT+++  Y ++P K+K L +++  E     A+      T  LLWL R + F+    +++     D   P +       +Y   LKK+HGW+    F  A+  AP +  F++ +    +V  +
Sbjct:   20 TGPFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMYGAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNANKAYEMALKKYHGWLVQKIFKAALYAAPYKSDFLKALSKGQNVTEE 174          
The following BLAST results are available for this feature:
BLAST of CV712403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PKHA8_DANRE4.439e-1934.23Pleckstrin homology domain-containing family A mem... [more]
PKHA8_MOUSE9.888e-1934.25Pleckstrin homology domain-containing family A mem... [more]
PKHA8_HUMAN2.877e-1833.56Pleckstrin homology domain-containing family A mem... [more]
PKHA9_HUMAN3.181e-1732.88Protein PLEKHA9 OS=Homo sapiens GN=PLEKHA9 PE=2 SV... [more]
GLTP_DANRE5.999e-1633.55Glycolipid transfer protein OS=Danio rerio GN=gltp... [more]
GLTP_PIG4.753e-1329.68Glycolipid transfer protein OS=Sus scrofa GN=GLTP ... [more]
GLTP_PANTR4.753e-1329.68Glycolipid transfer protein OS=Pan troglodytes GN=... [more]
GLTP_HUMAN4.753e-1329.68Glycolipid transfer protein OS=Homo sapiens GN=GLT... [more]
GLTP_BOVIN4.753e-1329.68Glycolipid transfer protein OS=Bos taurus GN=GLTP ... [more]
GLTP_RAT2.608e-1128.39Glycolipid transfer protein OS=Rattus norvegicus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001F10_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712403 ID=CV712403; Name=CV712403; organism=Citrus sinensis; type=EST; length=771bp
GGAATGAAGCACGTGAAGTCTGAGCAAGGCGAGATGCTTACCAAGCCTTT
CTTGGAAGTTTGCAAACTGATTTTGCCTGTTTTGGATAAGTTTGGAGCGG
CTATGTCTCTTGTAAAGTCAGATATTGGTGGTAATATTACGAGGTTGGAG
AATAAATATTTATCCAATCCCGAAAAGTACAAGAACTTGTACAGCATGGT
AGGAGAAGAAGTTGAAGCTAAAACAGCAAAAAGATCATCTAGTTGTACCA
ATGGTCTTCTTTGGTTGACAAGAGCAATGGATTTCCTGGTGGAATTGTTT
CGCAACTTACTTGCACATCCAGATTGGACAATGCCACAAGTTTGTACAGA
TTCCTACAGCAAGACCCTGAAAAAATTTCATGGCTGGATTGCAAGTTCAA
GTTTCACGGTCGCTATGAAGCTTGCACCAGATAGGAAGAAGTTTATGGAA
GTTATTGGTGGCTCTGGAGATGTTAATTCTGACATGGATAAATTTTGTAC
TGCATTTGCTCCTCTGCTTGAAGAGAACCACAAGTTTTTGGCTAGTGTTG
GCATGGATGATCTGAAAGCTTCATAGTGGAAAAATTCCCACGATCAGTGG
CTGGTGCTCTGCTTTACACTTGAGTGTCAACTTCTTTGCCATTTTAGTTT
CTGGACATTTTTCCATTGGCTTCTAAATATATGGACGTGATAAACAATCA
GCTGACTTCAATCTATACCGCATATTGTCCAATCGACTAACCTCTTCCGG
CTTAAACTTGTACTTCCTTAA
back to top