CV712383

Overview
NameCV712383
Unique NameCV712383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712383_ssr52 microsatellite CV712383_ssr52:52..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712383 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:  506 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASW 610
            +ASFKV +LESRDR+GGRIHTDYSFGCPVDMGASW
Sbjct:   49 EASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASW 83
[Close]
BLAST of CV712383 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:  506 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASW 610
            DASF+VV+LESRDR+GGR+HTDYSFG PVD+GASW
Sbjct:   49 DASFQVVVLESRDRIGGRVHTDYSFGFPVDLGASW 83
The following BLAST results are available for this feature:
BLAST of CV712383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAO4_ARATH3.298e-1288.57Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO3_ARATH6.220e-1182.86Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001E23_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712383 ID=CV712383; Name=CV712383; organism=Citrus sinensis; type=EST; length=803bp
CAATCGCTTAATGCAGCCGACGTTAAACGCTTCGTCGGCTTCCTATCGCT
CCTTCTTCTTCTTCTTGTTCGATTTAAATTATTTCAGTTTTTTTGAGAAA
AAAACAATAACAGAAAAAGATTCACCATATGATCTGGTTTGGTGAGCTGC
GTTATTCCTCCAATCTCAGCCGCTTCATTGCTGGCCTTCTCATTTTCATT
CTTTATCATTCTTTCCAATTAATTTCTAATTTCTTGACTCCTATACACCC
TTAATTATTTATTTTAATTTTATATTTTCTCTTCCTTTTTTCGATACCAT
CAAATATCAATCGCATCTCGCTTTTCATTTTCCGTTCTTCGTGCTCGATT
CCCTCTCTATTATGGATTCTAACCAATCATTCTCCAACAACTTCCTCGAC
GATACTGTAGCTTCGCTCATTGAGAGGGCGCAAATCGGTTCACTGCCTTC
TGTCATTGTGATTGGTGGTGGTATTTCGGGTCTTGCCGCTGCCCGGATCC
TCTATGATGCTTCTTTTAAGGTGGTCTTACTGGAATCGCGGGACAGACTT
GGTGGTCGTATTCATACGGACTACTCATTTGGTTGTCCAGTGGACATGGG
AGCTTCATGGCAAGTTTTCTTTTTTCTTTTTTTTTTTTAAAAAAAGAAAA
TATTTATTTGCAATGTTTAGGAACAACTTTATAGTGATTGTAATCAGGCA
CCATTACAATGTGAAGCATACTGTGATGGGATATAAATAGTTTCTGACAG
GCTTGATTGCACTCATCCACTACACACACATTCACTTATGCATGTGCTCC
CCC
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