CV712382

Overview
NameCV712382
Unique NameCV712382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10271 contig Csv1_Contig10271:434..1323. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 8.426e-108
Identity = 192/267 (71.91%), Postives = 225/267 (84.27%), Query Frame = -1
Query:  100 VIKALSKDIDIRXNQRVTKI-SNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQPGNLEKLQLVTL--SHEILGTA-FPLQISRM 888
            VI+ ++KD+DIR N RVTK+     NKV+V VE G NFVADA I+TVP+G+LKANLIQFEP+LP+WK SAI+ +GVGNENKIALRFD  FWPNVE LG+VAPTSYACGYFLNLHKATGHPVLVYMAAG  A DLEKLSDE+ ANFVM+QLKKMFPDA +P QYLV+RWGTD NTLGCY+YDVVGMP DLY RL  P+ N+FFGGEAV++EHQGS HGA+ AGV A+QNCQ+Y+ ++ G  EKL+LV+L  + +IL TA  PLQISRM
Sbjct:  231 VIRTIAKDLDIRLNHRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWPNVEFLGMVAPTSYACGYFLNLHKATGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIFERLGAWEKLKLVSLMGNSDILETATVPLQISRM 497          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.494e-88
Identity = 162/263 (61.60%), Postives = 197/263 (74.90%), Query Frame = -1
Query:  100 VIKALSKDIDIRXNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQPGNLEKLQLVTLSHEILGTAFPLQISRM 888
            VI  L+K +DIR   RVTKI    N V VT E+G+ FVADAA++ VPLG+LK+  I+FEPKLPEWK  AI D+GVG ENKI L F+ VFWP VE LGVVA TSY C YFLNLHKATGHPVLVYM AG+ A D+EK+SDE+AANF ++QL+++ PDA  PVQYLVSRWG+D N++G YSYD+VG P DLYERLR P+ NLFF GEA S    GSVHGAYS G+MAA++C+  +L++ G L+  Q V    E    + PL ISR+
Sbjct:  230 VINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYGELDLFQPV--MGEEGPASVPLLISRL 490          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.549e-88
Identity = 162/263 (61.60%), Postives = 193/263 (73.38%), Query Frame = -1
Query:  100 VIKALSKDIDIRXNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWPNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDATEPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLRAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQPGNLEKLQLVTLSHEILGTAFPLQISRM 888
            VI  LSK +DIR + R+TKIS   + V VT E G  FVADAA++ +PLG+LK+ +I FEPKLP+WK  AI D+GVG ENKI L FDNVFWPNVE LGVVA TSY C YFLNLHKAT HPVLVYM AG+ A D+EK SDE+AANF   QL+K+ PDA+ P+ YLVSRWG+D N+LG YSYD+V  P DLYERLR PL NLFF GEA S  + GSVHGAYS GV+AA++C+  +L++ G LE         E    + PL ISRM
Sbjct:  231 VINTLSKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWPNVEFLGVVAETSYGCSYFLNLHKATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLERYGELEHEM-----EEEAPASVPLLISRM 488          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.193e-31
Identity = 89/263 (33.84%), Postives = 130/263 (49.43%), Query Frame = -1
Query:  181 ALSKDIDIRXNQRVTKISNGCNKVMVTVEDGRN------FVADAAIVTVPLGILK----------ANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACGYFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLRAP-----------LGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQP 879
            AL++++DIR N  V +I  G   V V  E+ +       + AD  + T+ LG+LK          +N ++F+P LP+WK  AI  +G GN NK+ L FD +FW PN  L G V  T+ + G        +  PVL+ + AG  A  +E ++D+      M  LK +F + +  +P + +V+RW +D    G YSY  VG  G  Y+ L AP           L  LFF GE     +  +VHGAY +G+  A     Y L  P
Sbjct:  570 ALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREAGRIADYYLGYP 832          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSI (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.193e-31
Identity = 82/237 (34.60%), Postives = 138/237 (58.23%), Query Frame = -1
Query:  208 VIKALSKDIDIRXNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLG-VVAPTSYACGYFLNLHKAT--GHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP----DATEPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLRAPLGN--LFFGGEAVSMEHQGSVHGAYSAGVMAAQN 888
            +++AL++++ I   + V  I NG + V V V  G+ +  D A+ TVPLG+LK   ++F P+LP+ KL +I  +G G  NK+A+ F +VFW  +++  G +    S+   +FL    AT  G P+L+ + AG  A++ E      A + V+  L+ ++     +  +P+Q + +RWGTD+ +LG YS+  VG  GD Y+ L   +G+  LFF GEA +  +  ++HGA+ +G+  A N
Sbjct:  396 LVQALAENVPIVYERTVHTIRNGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAAN 632          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSJ (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.136e-30
Identity = 80/237 (33.76%), Postives = 137/237 (57.81%), Query Frame = -1
Query:  208 VIKALSKDIDIRXNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLG-VVAPTSYACGYFLNLHKAT--GHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP----DATEPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLRAPLGN--LFFGGEAVSMEHQGSVHGAYSAGVMAAQN 888
            ++++L++++ I   + V  I  G + V V V  G+ +  D A+ TVPLG+LK   ++F P+LP+ KL +I  +G G  NK+A+ F +VFW  +++  G +    S+   +FL    AT  G P+L+ + AG  A++ E      A + V+  L+ ++     +  +P+Q + +RWGTD+ +LG YS+  VG  GD Y+ L   +G+  LFF GEA +  +  ++HGA+ +G+  A N
Sbjct:  396 LVQSLAENVPIVYERTVHTIRYGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAAN 632          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: LDL1_ORYSJ (Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.136e-30
Identity = 84/259 (32.43%), Postives = 132/259 (50.97%), Query Frame = -1
Query:  136 IKALSKDIDIRXNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFWP-NVELLGVVAPTSYACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFP----DATEPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERL-RAPLGNLFFGGEAVSMEHQGSVHGAYSAGVMAAQNCQKYLLKQPGNLEKLQLVTLSHEI 885
            ++AL+  I I   Q V +I  GC+  MV   D + F  D  + TVPLG+LK   IQF P+LP  K  AI  +G G  NK+ L F   FW   ++  G +   S   G    F +    +G P+L+ + AG  A + EK S       V+  L+K+F     +  +P+Q + +RWGTD  T G YSY  +G  GD Y+ L  +    +FF GEA +  +  ++HGA  +G   A N  +   ++   ++  + + +++E+
Sbjct:  478 VRALADGIPIFYGQNVRRIQYGCDGAMVYT-DKQTFRGDMVLCTVPLGVLKKGNIQFVPELPAQKREAIERLGFGLLNKVVLLFPYDFWDGRIDTFGHLTEDSGQRGEFFLFYSYSSVSGGPLLIALVAGESAIEFEKTSPAENVEKVLETLRKIFSPKGIEVPKPLQAICTRWGTDKFTYGSYSYVAIGSSGDDYDILAESVCDRVFFAGEATNRRYPATMHGALLSGYREAANIVRAARRRAKKVDSPKKMDVNNEV 735          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.501e-29
Identity = 88/249 (35.34%), Postives = 130/249 (52.21%), Query Frame = -1
Query:  214 ALSKDIDIRXNQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLR-------------APLGNLFFGGEAVSMEHQGSVHGAYSAGVMAA 879
            AL++ +DI+ N  V ++   ++GC  + V T    + F+   DA + T+PLG+LK     +QF P LPEWK SA+  +G GN NK+ L FD VFW P+V L G V  T+ + G    F NL+KA   P+L+ + AG  A  +E +SD+      +  LK +F  +   +P + +VSRW  D    G YSY   G  G+ Y+ +               P+  LFF GE     +  +VHGA  +G+  A
Sbjct:  578 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 823          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.501e-29
Identity = 88/249 (35.34%), Postives = 130/249 (52.21%), Query Frame = -1
Query:  214 ALSKDIDIRXNQRVTKI---SNGCNKVMV-TVEDGRNFV--ADAAIVTVPLGILKAN--LIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMFPDAT--EPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLR-------------APLGNLFFGGEAVSMEHQGSVHGAYSAGVMAA 879
            AL++ +DI+ N  V ++   ++GC  + V T    + F+   DA + T+PLG+LK     +QF P LPEWK SA+  +G GN NK+ L FD VFW P+V L G V  T+ + G    F NL+KA   P+L+ + AG  A  +E +SD+      +  LK +F  +   +P + +VSRW  D    G YSY   G  G+ Y+ +               P+  LFF GE     +  +VHGA  +G+  A
Sbjct:  577 ALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKA---PILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822          
BLAST of CV712382 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.573e-29
Identity = 81/234 (34.62%), Postives = 126/234 (53.85%), Query Frame = -1
Query:  214 VIKALSKDIDIRXNQRVTKISNGCNKVMVTVEDGRNFVADAAIVTVPLGILKANLIQFEPKLPEWKLSAIADIGVGNENKIALRFDNVFW-PNVELLGVVAPTSYACG---YFLNLHKATGHPVLVYMAAGRFAYDLEKLSDESAANFVMMQLKKMF----PDATEPVQYLVSRWGTDTNTLGCYSYDVVGMPGDLYERLRAPLGN-LFFGGEAVSMEHQGSVHGAYSAGVMAA 888
            ++ AL   + +   + V +I +G + V +TVE G+ F AD A+ T PLG+LK+  I FEP+LPE KL AI  +G G  NK+A+ F +VFW   ++  G +       G    F + H  +G  VL+ + AG  A + EK+    A + V+  LK ++        +P+Q   +RWG+D    G YS+  VG  G  Y+ L   + + LFF GEA +  +  ++HGA  +G+  A
Sbjct:  359 LVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPDPIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREA 592          
The following BLAST results are available for this feature:
BLAST of CV712382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PAO4_ARATH8.426e-10871.91Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO2_ARATH1.494e-8861.60Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH2.549e-8861.60Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
LSDA_DROME2.193e-3133.84Possible lysine-specific histone demethylase 1 OS=... [more]
LDL3_ORYSI2.193e-3134.60Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL3_ORYSJ4.136e-3033.76Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL1_ORYSJ4.136e-3032.43Lysine-specific histone demethylase 1 homolog 1 OS... [more]
KDM1_MOUSE3.501e-2935.34Lysine-specific histone demethylase 1 OS=Mus muscu... [more]
KDM1_HUMAN3.501e-2935.34Lysine-specific histone demethylase 1 OS=Homo sapi... [more]
LDL2_ORYSJ4.573e-2934.62Lysine-specific histone demethylase 1 homolog 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001E23_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712382 ID=CV712382; Name=CV712382; organism=Citrus sinensis; type=EST; length=888bp
CCTTTTTTTTTTCCCTTTCCACAACTATCTTTCATTTATGTAGAAAATAG
TGTTAAAATTTGATTTTAAGTGTCCAAACAATTGGCATTTTGCATTTCAC
ATCCTCGAGATTTGGAGGGGAAATGCAGTTCCCAGAATTTCGTGGCTAAG
AGTGACAAGCTGAAGCTTTTCTAAATTACCAGGCTGCTTTAACAGATACT
TTTGACAGTTTTGAGCTGCCATAACCCCAGCAGAGTAAGCCCCATGTACA
GATCCTTGGTGTTCCATGCTTACAGCTTCCCCTCCAAAGAAAAGATTACC
CAACGGTGCTCGAAGCCTCTCGTACAAATCACCAGGCATTCCAACTACAT
CATATGAATAACAACCAAGAGTGTTTGTGTCTGTTCCCCACCGAGACACA
AGGTACTGAACCGGCTCAGTTGCGTCAGGAAACATTTTCTTGAGTTGCAT
CATCACAAAATTTGCAGCAGACTCATCTGATAGCTTCTCTAGATCATAGG
CAAATCTTCCAGCAGCCATATACACGAGGACTGGATGCCCAGTTGCCTTG
TGAAGATTAAGGAAATAACCACAAGCATAAGAGGTGGGGGCAACAACGCC
TAGGAGTTCTACATTTGGCCAAAAAACATTATCAAATCGGAGGGCAATCT
TATTTTCATTGCCCACACCAATATCTGCTATTGCAGAAAGCTTCCACTCG
GGCAACTTCGGTTCAAACTGAATTAAATTGGCCTTAAGAATACCGAGGGG
TACTGTCACAATAGCAGCATCTGCAACAAAATTTCTCCCGTCCTCAACCG
TGACCATCACTTTATTACATCCATTAGATATTTTTGTTACCCTTTGATTN
CAGCGTATGTCGATATCTTTTGAAAGAGCTTTTATTAC
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