CV712376

Overview
NameCV712376
Unique NameCV712376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712376 vs. ExPASy Swiss-Prot
Match: FBL10_ARATH (F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.349e-70
Identity = 136/225 (60.44%), Postives = 174/225 (77.33%), Query Frame = -3
Query:  119 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEEL---GVDQWDNSDGMYMHDYDEVDELEQWLMEG*DESDNDEEMANAEINAE 784
            LK+LLLDG+DISD G+SYL+  V+ SLV LS+RGC+ LTDK +S LFDG+SKL L+ELDLSNLP+L+D  I  LA    PI++L++R+C LIGD SV+ALAS  V +D   GSS+ LLDLY+CGGITQL+F+WLKKP+FPRL+WLG+TGSVNRDI+DALAR RP L V+CRGEEL   G D WD++D ++ H   + DELEQW++      + D EM +AE  +E
Sbjct:  430 LKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMSTLFDGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALASTRVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITGSVNRDIVDALARRRPHLQVSCRGEELGNDGEDDWDSAD-IHQHIEAQEDELEQWIL----GDEGDVEMEDAEDESE 649          
BLAST of CV712376 vs. ExPASy Swiss-Prot
Match: ATB_ARATH (F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.201e-19
Identity = 66/190 (34.74%), Postives = 104/190 (54.74%), Query Frame = -3
Query:  242 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF--DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSS--IRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGV----TGSVNRDILDALARSRPFLNVACRGEELGV-DQWD 784
            L  L L G+D++D G+  L  + +  + +LSLRGC+R++D+ IS L   +GT    L  LDL ++P +SD  I T+  C   ++EL +R C  + D+S+ +LA+    + +  G S  +R L+++NC  +T  A RWL KP F  L WLG+           +   +   RP+L +   G ELG  D W+
Sbjct:  415 LTSLNLAGADVTDSGMLALGKSDVP-ITQLSLRGCRRVSDRGISYLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLATW---ERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMICGQRPWLTLCFDGCELGCSDGWE 600          
The following BLAST results are available for this feature:
BLAST of CV712376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBL10_ARATH4.349e-7060.44F-box/LRR-repeat protein 10 OS=Arabidopsis thalian... [more]
ATB_ARATH1.201e-1934.74F-box protein At-B OS=Arabidopsis thaliana GN=ATB ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001E20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712376 ID=CV712376; Name=CV712376; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTGTAAGAGTTAACAGTATGTAGATATACACAATCAGTGAAAA
CTGATATAAGTTACACGTACATGCATACATACAAGGTGAAACCTTATCTT
AGCAAATTACTCCATTGGTTCTGCATTGATTTCTGCATTGGCCATCTCCT
CGTCGTTGTCACTCTCGTCCTATCCTTCCATAAGCCACTGCTCAAGTTCG
TCGACCTCATCATAGTCATGCATGTACATACCATCAGAGTTATCCCACTG
GTCAACACCCAGTTCCTCACCACGGCAAGCCACGTTCAGGAATGGTCTAC
TCCTGGCTAAAGCATCTAAGATATCTCTATTTACACTCCCTGTCACTCCC
AACCATCTCAACCTTGGAAAGTAAGGTTTCTTTAACCACCGGAATGCAAG
CTGTGTTATGCCACCACAGTTATAAAGATCCAACAACCTTATGCTACTAC
CATACCATCTGTCGTCATCAACCAGCATTGAGGCCAGTGCAATAACAGAG
GTGTCACCTATCAGCGGACATTGTCGCACTCGGAGTTCTGAGATTGGCAC
CCGACATGTTGCCAGTGTCAAAATCCCATTATCGGAGAGGTGTGGGAGAT
TTGACAGATCCAATTCTTGAAGCTGCAGTTTAGAAGTGCCATCAAACAGA
GCAGAGATGCATTTGTCTGTGAGTCTCTTGCACCCTCTAAGAGACAACTT
AACTAATGAAGTTATGACAGTGAGTCTTAAATAAGACACACCCACATCAC
TTATATCAGACCCATCCAATAATAAAATCTTCAATT
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