CV712373

Overview
NameCV712373
Unique NameCV712373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1518 contig Csv1_Contig1518:450..1281. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 7.211e-66
Identity = 114/215 (53.02%), Postives = 155/215 (72.09%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            +GGI FNKA+GM  ++Y G D RFN VFN GM  H++I M+K+LE+Y GFE +K LVDV       +N I+SKYP IKGIN+DLP+VI+DAPSYPG+EHVGGD+F ++P+AD +FMKW+ H++ DE  LK LKNCY+ALPD GK++     +   P +S A++ +  +D I+L   P G+ERT++E+ +LA  AGF+G    C   N Y+MEFLK
Sbjct:  149 DGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.740e-65
Identity = 117/215 (54.42%), Postives = 153/215 (71.16%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            EGGI FNKA+GM  ++Y G D RFN VFN GM  H++I M+K+LE+YKGFE +  +VDV       LNMI+SKYP IKGIN+DLP+VI+DAP YPG+EHVGGD+F +VP+ D IFMKW+ H++ DE  LK LKNCY ALPD GK++     +   P +S A++ +  +D I+L   P G+ERT+QE+  LA  AGF+G +  C   N YV+EFLK
Sbjct:  149 EGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.973e-65
Identity = 113/215 (52.56%), Postives = 152/215 (70.70%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            +GGI FNKA+GM  +DY G D RFN VFN GM  H++I M+K+LE+YKGFE +  +VDV       +NMI+SKYP IKGIN+DLP+VI+DAP YPG++HVGGD+F +VP+ D IFMKW+ H++ DE  LK LKNCY ALPD GK++     +   P  S A++ +  +D ++L   P G+ERT+QE+  LA  +GF+G+   C   N YV+EFLK
Sbjct:  149 DGGIPFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGFEGLTSIVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIEDAPQYPGVQHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDTSLATKGVVHIDVVMLAHNPGGKERTEQEFEALAKGSGFQGIRVACNAFNTYVIEFLK 363          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: OMT1_ARATH (Quercetin 3-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 9.746e-63
Identity = 109/215 (50.70%), Postives = 157/215 (73.02%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            +GGI FNKA+GM  ++Y G D RFN VFNNGM +H++I M+K+LE+YKGFE +  LVDV       L MI+SKYP++KGIN+DLP+VI+DAPS+PGIEHVGGD+F +VP+ D IFMKW+ H++ DE  +K LKNCY++LP+ GK++     + E P +S +++++  +D I+L   P G+ERT++E+  LA  +GFKG+   C    + ++E LK
Sbjct:  147 DGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLIELLK 361          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_POPKI (Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.662e-62
Identity = 112/215 (52.09%), Postives = 150/215 (69.77%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            EGGI FNKA+GM  ++Y G D RFN VFN GM  H++I M+K+LE+YKGFE +  LVDV       +N I+SKYP IKGIN+DLP+VI+DAPSYPG+EHVGGD+F +VP AD +FMKW+ H++ D   LK LKNCY ALP+ GK++ +   +   P  S A++ +  +D I+L   P G+ERT++E+  LA  AGF+G    C   N +V+EF K
Sbjct:  149 EGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVIEFRK 363          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.662e-62
Identity = 111/215 (51.63%), Postives = 151/215 (70.23%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            +GGI FNKA+GM  ++Y G D RFN VFN GM +H++I M+K+LE+Y GF+ +K +VDV       LNMI+SKYP IKGIN+DLP+VI+DAPSYPG+EHVGGD+F +VP+ D IFMKW+ H++ DE  +K LKNCY ALP  GK++     + E P    A++ +  +D I+L   P G+ERT++E+  LA  AGFK  +  C   N ++ME LK
Sbjct:  147 DGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_POPTM (Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.836e-62
Identity = 111/215 (51.63%), Postives = 151/215 (70.23%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            +GGI FNKA+GM  ++Y G D RFN VFN GM  H++I M+K+LE+YKGFE +  LVDV       +N I+SKYP IKGIN+DLP+VI+DAPSYPG+EHVGGD+F +VP+AD +FMKW+ H++ D   LK LKNCY ALP+ GK++ +   +   P  S A++ +  +D I+L   P G+ERT++E+  LA  AGF+G    C   N +V+EF K
Sbjct:  149 DGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEFRK 363          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_CLABR (Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.704e-62
Identity = 113/215 (52.56%), Postives = 149/215 (69.30%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            +GGI FNKA+GM  ++Y G D RFN VFN GM  H++I M+K+ E Y GFE +  +VDV       L+MI++KYP IKGIN+DLP+VI+DAP YPG+EHVGGD+F +VP+ D IFMKW+ H++ DE  LK LKNCY ALP+ GK++     +   P  S A++ +  +D I+L   P G+ERT++E+  LAI AGFKG    C   N YVMEFLK
Sbjct:  154 DGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPDPSLATKGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT3_POPKI (Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.135e-61
Identity = 110/215 (51.16%), Postives = 150/215 (69.77%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            EGGI FNKA+GM  ++Y G D RFN VFN GM  H+ + M+K+LESYKGFE +  LVDV       ++ I+SKYP IKGIN+DLP+VI DAP++PG+E+VGGD+F +VP+AD +FMKW+ H++ DE  L+LLKNCY ALP+ GK++ +   +   P  S A++ +  +D I+L   P G+ERT +E+  LA  AGFKG    C   N +V+EF K
Sbjct:  148 EGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSKMAMKKILESYKGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSVPKADAVFMKWICHDWSDEHCLRLLKNCYDALPENGKVILVECILPVAPDTSLATKGVMHVDAIMLAHNPGGKERTDKEFEGLARGAGFKGFEVMCCAFNTHVIEFRK 362          
BLAST of CV712373 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.095e-61
Identity = 109/215 (50.70%), Postives = 151/215 (70.23%), Query Frame = -1
Query:  188 EGGIAFNKAHGMQIYDYLGVDSRFNDVFNNGMLSHTSIVMEKVLESYKGFEHVKKLVDVXXXXXXXLNMIISKYPHIKGINYDLPYVIKDAPSYPGIEHVGGDLFENVPEADTIFMKWMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 832
            +GGI FNKA+GM  ++Y G D RFN VFN GM +H++I M+K+LE Y+GFE +K +VDV       LNMIISKYP IKGIN++LP+V++DAPS+ G+EHVGGD+F +VP+ D IFMKW+ H++ D+   KLLKNCY+ALPD GK++     + E P  S A++ +  +D ++L   P G+ERT++E+  LA  AGFK     C   N ++ME  K
Sbjct:  136 DGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350          
The following BLAST results are available for this feature:
BLAST of CV712373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
COMT1_MEDSA7.211e-6653.02Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_PRUDU2.740e-6554.42Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_ROSCH7.973e-6552.56Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
OMT1_ARATH9.746e-6350.70Quercetin 3-O-methyltransferase 1 OS=Arabidopsis t... [more]
COMT1_POPKI1.662e-6252.09Caffeic acid 3-O-methyltransferase 1 OS=Populus ki... [more]
COMT1_OCIBA1.662e-6251.63Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
COMT1_POPTM2.836e-6251.63Caffeic acid 3-O-methyltransferase 1 OS=Populus tr... [more]
COMT1_CLABR3.704e-6252.56Caffeic acid 3-O-methyltransferase OS=Clarkia brew... [more]
COMT3_POPKI3.135e-6151.16Caffeic acid 3-O-methyltransferase 3 OS=Populus ki... [more]
COMT1_COFCA4.095e-6150.70Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001E18_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712373 ID=CV712373; Name=CV712373; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTGCCTTATACGGGAATCAATCTCCCTATAAGAGAT
TTATTATTGATAAAACGAAAGAGATTACATAAGAGAAGCCCTCAATCCAA
AGGAAAGAGATAACAAGACAAACCGGAAATTGAAAACAACCCAAGAAAGC
TAAGGAGATCTTTCCGAATAGAGAAAAAAGCAATCTATTTCAAGAACTCC
ATAACATATAAATTACATACACCACATTCGTAGCTGACACCTTTAAATCC
AGCTTTAATTGCCAATTCATTGTATTCTTGTTTGGTGCGCTCTCTTCCAT
GAGGAATTTGGATCAACAAAATTGTATCCAAAATAGAGATTTCCCTTGAA
GCCGCACTATTTTGAGGCACTTCTGAAATTGTTGAATTAATATTGAGCAG
CTTCCCACCATCTGGAAGAGCTTTGTAACAATTCTTCAACAATTTCAAAG
TTTGCTCATCATCAAAATTGTGAAGCATCCACTTCATGAAAATGGTATCC
GCCTCAGGAACATTTTCGAATAAATCTCCACCCACGTGTTCGATGCCAGG
ATAAGATGGGGCATCTTTAATGACATAAGGCAGATCATAATTAATACCCT
TAATATGAGGGTATTTGGAAATTATCATGTTCAGGGTAGTTCCTAAGCCG
CCGCCAACATCAACAAGCTTCTTAACATGCTCAAAGCCTTTGTATGATTC
TAGGACCTTCTCCATGACAATAGAAGTGTGGCTTAACATTCCATTATTGA
AAACATCATTGAACCTTGAGTCGACGCCTAGGTAATCATAGATTTGCATT
CCGTGCGCTTTATTAAACGCAATTCCTCCTTC
back to top