CV712336

Overview
NameCV712336
Unique NameCV712336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3085 contig Csv1_Contig3085:36..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSA (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa GN=ATPA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_RAPSA (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
[Close]
BLAST of CV712336 vs. ExPASy Swiss-Prot
Match: ATPAM_BRANA (ATP synthase subunit alpha, mitochondrial OS=Brassica napus GN=ATPA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.010e-24
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -3 
Query:  596 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 736
            PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  342 PTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-24
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 
Query:  778 RAAKRSDQTGAGSLTALP 831
            RAAKRSDQTGAGSLTALP
Sbjct:  311 RAAKRSDQTGAGSLTALP 328

HSP 3 Score: 33.8834 bits (76), Expect = 1.010e-24
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = -2 
Query:  735 PVIETQAGDVSAYIP 779
            PVIETQAGDVSAYIP
Sbjct:  328 PVIETQAGDVSAYIP 342
The following BLAST results are available for this feature:
BLAST of CV712336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPAM_OENBI1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Oenot... [more]
ATPAM_SOYBN1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Glyci... [more]
ATPAM_PHAVU1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Phase... [more]
ATPAM_ORYSJ1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_ORYSI1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_ORYSA1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Oryza... [more]
ATPAM_MAIZE1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Zea m... [more]
ATPAM_RAPSA1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Rapha... [more]
ATPAM_PEA1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Pisum... [more]
ATPAM_BRANA1.010e-2485.11ATP synthase subunit alpha, mitochondrial OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712336 ID=CV712336; Name=CV712336; organism=Citrus sinensis; type=EST; length=831bp
CTTTGGGCGAGTCCCANTTTCGTTCGATTTGCTCTAGATGGGAGAGCAAA
GTGCGTTGGGATAATAGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAA
GAGCACCCCCCGTATATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGA
ACCCATCATCAATTAACGCGGATTCGATTCGTTTCTCAATTCGAAAATGA
GACTCTAAAATCTCTAAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCC
TACGAAATATAAAGAAAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAAT
CCTGCAGTAGCGGCGGGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCA
ACGGGTACTGTTTCTTGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAG
CCAATCCACAATTGGAGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAG
GTATAGTACTCTGAAAAGAAATAAGAATGAAGAAGATAAAACCCCACATT
AAGATTTTAATTGGGTTTTTTCTTTTAAAAATATCATTAGTGGATTCCCA
TTGGTTAGGAGAACCCAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTT
GGAGCGCGGAAACATTCACAATAGAGCCAACGCGACTGACAGATAAGCCG
ACGTTAATAGCGGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACA
AATTTGTCCGTCAGTAATTGAAATAACATTTGTAGGGAATATAAGCCGAT
ACATCTCCAGCTTGTGTTTCAATGACGGGGTAAGGCGGTCAAGCTACCTG
CACCTGTCTGGTCCGATCGTTTCGCGGCTCT
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