CV712305

Overview
NameCV712305
Unique NameCV712305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712305_ssr77 microsatellite CV712305_ssr77:77..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KPK19_ARATH (Serine/threonine-protein kinase AtPK19 OS=Arabidopsis thaliana GN=ATPK19 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 7.058e-44
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFN--ENPFKGFTYVRPAASFLQRNT 354
            +KDKIKLP FLS+EAH+LLKGLLQKE  +RLGSGP G++EIK HKWFK INWKKLEARE +PSF P V+G+ C+ANF++CWT+M +LDSP +SP  +   NPF  FTYVRP  SFL R T
Sbjct:  349 VKDKIKLPQFLSNEAHALLKGLLQKEPERRLGSGPSGAEEIKKHKWFKAINWKKLEAREVQPSFKPAVSGRQCIANFDKCWTDMSVLDSPASSPNSDAKANPFTNFTYVRPPHSFLHRTT 468          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KPK1_ARATH (Serine/threonine-protein kinase AtPK1/AtPK6 OS=Arabidopsis thaliana GN=ATPK1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.738e-42
Identity = 79/120 (65.83%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFN--ENPFKGFTYVRPAASFLQRNT 354
            +KDKIKLP FLS+EAH++LKGLLQKE  +RLGSG  G++EIK HKWFK INWKKLEARE  PSF PEV+G+ C+ANF++CWT+M +LDSP +SP  +   NPF  FTYVRP  SFL ++T
Sbjct:  343 VKDKIKLPQFLSNEAHAILKGLLQKEPERRLGSGLSGAEEIKQHKWFKGINWKKLEAREVMPSFKPEVSGRQCIANFDKCWTDMSVLDSPASSPSSDPKANPFTNFTYVRPPPSFLHQST 462          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KS6B1_BOVIN (Ribosomal protein S6 kinase beta-1 OS=Bos taurus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.482e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSP--VASPKFNENPFKGFTYVRPA 330
            +K K+ LP +L+ EA  LLK LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP   A  +     F GFTYV P+
Sbjct:  306 LKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSALSESANQVFLGFTYVAPS 417          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KS6B1_RAT (Ribosomal protein S6 kinase beta-1 OS=Rattus norvegicus GN=Rps6kb1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 330
            +K K+ LP +L+ EA  LLK LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  306 LKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KS6B1_RABIT (Ribosomal protein S6 kinase beta-1 OS=Oryctolagus cuniculus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 330
            +K K+ LP +L+ EA  LLK LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  306 LKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KS6B1_MOUSE (Ribosomal protein S6 kinase beta-1 OS=Mus musculus GN=Rps6kb1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 330
            +K K+ LP +L+ EA  LLK LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  306 LKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KS6B1_HUMAN (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.936e-17
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 330
            +K K+ LP +L+ EA  LLK LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  306 LKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KPCA_MOUSE (Protein kinase C alpha type OS=Mus musculus GN=Prkca PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 327
            ++  +  P  LS EA S+ KGL+ K+ +KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P+L  P  +     +++ F+GF+YV P
Sbjct:  551 MEHNVSYPKSLSKEAVSICKGLMTKQPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 661          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KPCA_RAT (Protein kinase C alpha type OS=Rattus norvegicus GN=Prkca PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 327
            ++  +  P  LS EA S+ KGL+ K  +KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P+L  P  +     +++ F+GF+YV P
Sbjct:  551 MEHNVSYPKSLSKEAVSICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 661          
BLAST of CV712305 vs. ExPASy Swiss-Prot
Match: KPCA_HUMAN (Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 IKDKIKLPAFLSSEAHSLLKGLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 327
            ++  +  P  LS EA S+ KGL+ K  +KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P+L  P  +     +++ F+GF+YV P
Sbjct:  551 MEHNVSYPKSLSKEAVSICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNP 661          
The following BLAST results are available for this feature:
BLAST of CV712305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
KPK19_ARATH7.058e-4467.50Serine/threonine-protein kinase AtPK19 OS=Arabidop... [more]
KPK1_ARATH1.738e-4265.83Serine/threonine-protein kinase AtPK1/AtPK6 OS=Ara... [more]
KS6B1_BOVIN1.482e-1740.18Ribosomal protein S6 kinase beta-1 OS=Bos taurus G... [more]
KS6B1_RAT1.936e-1740.18Ribosomal protein S6 kinase beta-1 OS=Rattus norve... [more]
KS6B1_RABIT1.936e-1740.18Ribosomal protein S6 kinase beta-1 OS=Oryctolagus ... [more]
KS6B1_MOUSE1.936e-1740.18Ribosomal protein S6 kinase beta-1 OS=Mus musculus... [more]
KS6B1_HUMAN1.936e-1740.18Ribosomal protein S6 kinase beta-1 OS=Homo sapiens... [more]
KPCA_MOUSE3.302e-1739.29Protein kinase C alpha type OS=Mus musculus GN=Prk... [more]
KPCA_RAT5.632e-1739.29Protein kinase C alpha type OS=Rattus norvegicus G... [more]
KPCA_HUMAN5.632e-1739.29Protein kinase C alpha type OS=Homo sapiens GN=PRK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D07_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712305 ID=CV712305; Name=CV712305; organism=Citrus sinensis; type=EST; length=470bp
ATTAAGGATAAGATCAAGTTGCCTGCGTTTTTGTCAAGTGAAGCACATTC
ACTTTTAAAAGGGCTGCTGCAGAAAGAAGCAAGCAAGCGCCTTGGCAGCG
GACCAGGTGGCAGTCAGGAGATAAAATCCCACAAATGGTTCAAGATGATC
AATTGGAAGAAATTGGAGGCTCGGGAAACTAGGCCAAGTTTTCTTCCTGA
AGTCGCTGGCAAGCACTGTGTTGCTAACTTTGAGGAGTGCTGGACTAACA
TGCCATTGCTGGATTCTCCTGTTGCCAGTCCAAAATTTAATGAGAATCCG
TTCAAGGGGTTTACTTATGTGAGGCCTGCGGCATCATTTCTTCAAAGGAA
CACTTGATATTGTCAGGGGACCTTTGAGCCCCTCGTTTGCAGGTTCTTGA
AAAACTTGGATATTTGTTTTCGTTGTAGCTGAATTATGACCGAAAGAGAG
AGGAAATAATGTTCTTATTC
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