CV712302

Overview
NameCV712302
Unique NameCV712302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2916 contig Csv1_Contig2916:1..641. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of CV712302 vs. ExPASy Swiss-Prot
Match: YCF68_EUCGG (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.252e-37
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = -2
Query:  179 LRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG 310
            +RRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG
Sbjct:    1 MRRCAWAVRALSHMDSSMCSSAPDPEMWIIQGTLAWRTSPVRTG 44          

HSP 2 Score: 80.8777 bits (198), Expect = 2.252e-37
Identity = 41/59 (69.49%), Postives = 42/59 (71.19%), Query Frame = -1
Query:    3 GFENKLLLRRIDGAIQVRSNVDPTFYSLVXXXXXXXXXXXXXXXDNPYIPYQCMDSYLS 179
            GFE K LLRRIDGAIQVRSNVDPTFYSLV               +NPYIPYQCMDSYLS
Sbjct:   44 GFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPYQCMDSYLS 102          
BLAST of CV712302 vs. ExPASy Swiss-Prot
Match: YCF68_PINTH (Uncharacterized protein ycf68 OS=Pinus thunbergii GN=ycf68 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.301e-12
Identity = 41/72 (56.94%), Postives = 44/72 (61.11%), Query Frame = -1
Query:    3 MAYFSC-SNRGFENKLLLRRIDGAIQVRSNVDPTFYSLV---XXXXXXXXXXXXXXXDNPYIPYQCMDSYLS 206
            MAY SC    GF  +L+LRRIDGAIQVRSN DPTFYS V                  +NPYIPYQCMD YLS
Sbjct:    1 MAYSSCLCEPGFGTELILRRIDGAIQVRSNTDPTFYSFVDLGGPGVPVVIHLGSSLLENPYIPYQCMDGYLS 72          
BLAST of CV712302 vs. ExPASy Swiss-Prot
Match: YCF68_PINKO (Uncharacterized protein ycf68 OS=Pinus koraiensis GN=ycf68 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 41/72 (56.94%), Postives = 44/72 (61.11%), Query Frame = -1
Query:    3 MAYFSCS-NRGFENKLLLRRIDGAIQVRSNVDPTFYSLV---XXXXXXXXXXXXXXXDNPYIPYQCMDSYLS 206
            MAY SC    GF  +L+LRRIDGAIQVRSN DPTFYS V                  +NPYIPYQCMD YLS
Sbjct:    1 MAYSSCLFEPGFGTELILRRIDGAIQVRSNADPTFYSFVDLGGPGGPVVIHHGSSLLENPYIPYQCMDGYLS 72          
BLAST of CV712302 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSJ (Uncharacterized protein ycf68 OS=Oryza sativa subsp. japonica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.312e-12
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   93 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 206
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 33.4982 bits (75), Expect = 9.312e-12
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAISR 55
            LFS IHTSLISVW AISR
Sbjct:   52 LFSRIHTSLISVWRAISR 69          
BLAST of CV712302 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSI (Uncharacterized protein ycf68 OS=Oryza sativa subsp. indica GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.312e-12
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   93 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 206
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 33.4982 bits (75), Expect = 9.312e-12
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAISR 55
            LFS IHTSLISVW AISR
Sbjct:   52 LFSRIHTSLISVWRAISR 69          
BLAST of CV712302 vs. ExPASy Swiss-Prot
Match: YCF68_ORYSA (Uncharacterized protein ycf68 OS=Oryza sativa GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.312e-12
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   93 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 206
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 33.4982 bits (75), Expect = 9.312e-12
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAISR 55
            LFS IHTSLISVW AISR
Sbjct:   52 LFSRIHTSLISVWRAISR 69          
BLAST of CV712302 vs. ExPASy Swiss-Prot
Match: YCF68_ORYNI (Uncharacterized protein ycf68 OS=Oryza nivara GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.312e-12
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -1
Query:   93 MAYFSCSNRGFE-NKLLLRRIDGAIQVRSNVDPTFYSLV 206
            MAY SC NR  + NKLLLRRIDGAIQVRS+VD TFYSLV
Sbjct:    1 MAYSSCLNRSLKPNKLLLRRIDGAIQVRSHVDLTFYSLV 39          

HSP 2 Score: 33.4982 bits (75), Expect = 9.312e-12
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = -2
Query:    2 LFSIIHTSLISVWTAISR 55
            LFS IHTSLISVW AISR
Sbjct:   52 LFSRIHTSLISVWRAISR 69          
The following BLAST results are available for this feature:
BLAST of CV712302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YCF68_EUCGG2.252e-3797.73Uncharacterized protein ycf68 OS=Eucalyptus globul... [more]
YCF68_PINTH1.301e-1256.94Uncharacterized protein ycf68 OS=Pinus thunbergii ... [more]
YCF68_PINKO1.699e-1256.94Uncharacterized protein ycf68 OS=Pinus koraiensis ... [more]
YCF68_ORYSJ9.312e-1279.49Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSI9.312e-1279.49Uncharacterized protein ycf68 OS=Oryza sativa subs... [more]
YCF68_ORYSA9.312e-1279.49Uncharacterized protein ycf68 OS=Oryza sativa GN=y... [more]
YCF68_ORYNI9.312e-1279.49Uncharacterized protein ycf68 OS=Oryza nivara GN=y... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001D05_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712302 ID=CV712302; Name=CV712302; organism=Citrus sinensis; type=EST; length=641bp
GTCGAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTATCGAG
AAGAGAGGAGCCGTGGTGGTCCCCCCCGGACCGCCCGGATCCCACGAGTG
AATAGAAAGTTGGATCTACATTGGATCTCACCTGAATCGCCCCATCTATC
CTCCTGAGGAGGAGTTTGTTTTCAAACCCCCGGTTCGAACAGGAGAAGTA
CGCCATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCTGA
TGAGCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCAC
AACGACGCAATTATCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCGTC
GTGCGGGCCTCCCGCTGGGGGCCCACTATGCCAAAAGCGAGAGAAACCCC
ATCCCTCTCTTTCCTTTTTACGCCCCCAGGTCCCTCCCGTGTGGCGACAT
GGGGGCGTAAAAGGGGGATCCTATCAACTTGTTCCGACCTAGGATAATAA
GCTCATGGGCTTGGTCTTACTTCACCGTCGAGAAACGAAAGAAGACTTCC
ATCTCCAAGTTTAACTCAGGCGTAGCTCGCTTCTTTTTGGGTGTGAAGCG
GTGTCAAACCAAAATACCCAACAAGCATTAGCTCTCCCTGA
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