CV712292

Overview
NameCV712292
Unique NameCV712292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 365.925 bits (938), Expect = 1.598e-100
Identity = 168/230 (73.04%), Postives = 192/230 (83.48%), Query Frame = -1
Query:   38 KWISSKVNIH---------GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHRH 700
            K++  KV+I          GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPY+VQTN+YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KDQAMGVYSSIWNADDWATQGG VKTDWSHAPFVASYK F+IDACE P +     +  KC  + +++FWWDEPT+SEL++HQ+HQL+WVRANH+IYDYC D +RFP  P EC HHRH
Sbjct:   66 KYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEIPTTT----DLSKC--NGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPVTPLECQHHRH 289          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.488e-69
Identity = 123/211 (58.29%), Postives = 152/211 (72.04%), Query Frame = -1
Query:   41 GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAI-PTECVHHR 670
            GTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKE+H YS+LWN  Q+VF VDE PIRV  N +  G+ FP DQ M +Y+S+WNADDWAT+GG  KTDWS APF+A+YKGF ID CE  ASV    NAK C +  ++  WWD+P   +L+  Q  +L WVR  + IY+YCTDT R+P I P EC   R
Sbjct:   91 GTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCE--ASV----NAKFCDTQGKR--WWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKRDR 293          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.593e-68
Identity = 117/210 (55.71%), Postives = 151/210 (71.90%), Query Frame = -1
Query:   41 GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 670
            GTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G GNREQR++LWFDP+K++H+YS+LWN  Q+VF VD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W  APFVASY+GF +D CE  ASV    NAK C +  ++  WWD+    +L+ +Q  +L WVR  + IY+YCTD  RFP  P EC   R
Sbjct:   90 GTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCE--ASV----NAKFCETQGKR--WWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVPPPECRRDR 291          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.692e-68
Identity = 121/231 (52.38%), Postives = 156/231 (67.53%), Query Frame = -1
Query:   41 RGSYKWISSKVNIH-------GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 712
            RGSY +    ++I        GTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK++H+YS+LWN   + F VD+TPIRV  N +  G+ +P DQ M +YSS+WNADDWAT+GGR KTDWS APFVASY+GF +D CE  A       AK C++   +  WWD+P   +L+  Q  +L WVR  H IY+YCTD  R+ A+  EC   R
Sbjct:   69 RGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASA------EAKFCATQGAR--WWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAPECKRDR 291          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.972e-67
Identity = 117/210 (55.71%), Postives = 148/210 (70.48%), Query Frame = -1
Query:   41 GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 670
            GTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPT ++H YS+LWN  Q+VF VD+ PIRV  N    G+ FP +Q M +Y+S+WNADDWAT+GG  KTDWS APF+ASYKGF ID CE  ASV    NAK C +  ++  WWD+P   +L+  Q  +L WVR  + IY+YCTD  R+  +P EC   R
Sbjct:   89 GTVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCE--ASV----NAKFCDTQGKR--WWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQVPPECTRDR 290          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.775e-67
Identity = 122/231 (52.81%), Postives = 158/231 (68.40%), Query Frame = -1
Query:   41 RGSYKWISSKVNIH-------GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 712
            +GSY +    +NI        GTVTAF +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H YS+LWN  Q+VFLVD  PIRV  NL+  G+ FP +Q M VY+S+WNADDWAT+GG  KTDWS APFVA YKGF +D CE  ASV    N++ C++  ++  WWD+    +L+  Q  +L WVR    IY+YCTD +R+P +P EC  +R
Sbjct:   69 KGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCE--ASV----NSRFCATQGKR--WWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDRTRYPQLPPECRRNR 291          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.180e-65
Identity = 116/210 (55.24%), Postives = 147/210 (70.00%), Query Frame = -1
Query:   41 GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 670
            G VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIR   N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APFVASYKGF ID C+  ASV     AK C++  + R WWD+    +L+  Q  +L WVR    IY+YCTD +RFP +P EC   R
Sbjct:   93 GVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQ--ASV----EAKYCAT--QGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPVMPAECKRDR 294          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.855e-65
Identity = 115/210 (54.76%), Postives = 148/210 (70.48%), Query Frame = -1
Query:   41 GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 670
            G VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APF+ASY+GF ID C+  ASV     AK C++  + R WWD+    +L+  Q  +L WVR    IY+YCTD +RFP +P EC   R
Sbjct:   92 GVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQ--ASV----EAKYCAT--QGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPVMPAECRRDR 293          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 2.040e-63
Identity = 112/210 (53.33%), Postives = 142/210 (67.62%), Query Frame = -1
Query:   53 NIHGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFP-AIPTEC 679
            N  GTVTA+Y+SS+GP H+E DFEFLGN TG+PY++ TNV+  G GNREQ+  LWFDPTK FHTYSL+W  + ++F+VD  PIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+GG VKTDWS APF A Y+GF   AC   +  +  D   K S +       +    +ELN +   +L WV+   +IYDYC+D  RFP   P EC
Sbjct:   82 NSAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVSSGSSFCDPKFKSSFTN-----GESQVANELNAYGRRRLRWVQKYFMIYDYCSDLKRFPQGFPPEC 286          
BLAST of CV712292 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.480e-63
Identity = 107/210 (50.95%), Postives = 142/210 (67.62%), Query Frame = -1
Query:   41 GTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYKGFEIDACECPASVAGADNAKKCSSSAEKRFWWDEPTLSELNVHQSHQLMWVRANHLIYDYCTDTSRFPAIPTECVHHR 670
            G VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H+YS+LWN  Q+V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+GG  KTDWS+APF ASY  F +D CE     A     + C++   +  WWD+    +L+  Q  +L WVR  + IY+YCTD  R+P +P EC   R
Sbjct:   90 GVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCE----AATPQEVQVCNTKGMR--WWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPTLPPECTKDR 293          
The following BLAST results are available for this feature:
BLAST of CV712292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
XTH9_ARATH1.598e-10073.04Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_SOYBN2.488e-6958.29Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH3.593e-6855.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT4.692e-6852.38Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN3.972e-6755.71Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHB_PHAAN6.775e-6752.81Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH2.180e-6555.24Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_BRAOB4.855e-6554.76Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH16_ARATH2.040e-6353.33Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC3.480e-6350.95Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C24_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712292 ID=CV712292; Name=CV712292; organism=Citrus sinensis; type=EST; length=856bp
CTTTTTTCCTTCAGTCATTCACAATCATTCATGGCTAGTGGCGGTGGTGC
ACGCACTCGGTGGGAATAGCTGGGAACCTAGACGTGTCAGTGCAATAGTC
ATAGATGAGGTGATTGGCTCTAACCCACATGAGCTGGTGGCTTTGGTGCA
CATTGAGCTCAGACAATGTTGGCTCATCCCACCAGAACCTTTTCTCAGCA
CTGCTGCTGCATTTTTTGGCATTATCGGCACCTGCAACCGACGCTGGGCA
CTCACATGCATCAATTTCAAAGCCCTTGTATGATGCAACAAAAGGTGCAT
GGCTCCAGTCCGTCTTGACCCTTCCCCCCTGTGTGGCCCAGTCATCAGCA
TTCCATATTGAACTGTACACACCCATGGCTTGGTCCTTTGGGAAGGGAAT
TCCTTTGTGCTCCAAGTTAGTGTGCACTCTAATTGGGGTCTCATCCACCA
AAAATACAACTTGGCGCTGGTTCCAAAGGAGGGAATAGGTATGAAATTCC
TTTGTTGGGTCGAACCAGAGGTCAAGTCTCTGCTCTCTGTTGCCCACACC
ATTCACATAAACATTGGTTTGGACTAAGTATGGCTCTCCTGTAGTGTTCC
CCAGGAACTCAAAATCGAACTCGTTGTGATTTGGACCGTCTGATGACATA
TAGAAGGCAGTGACAGTTCCATGGATATTGACTTTGGAACTTATCCATTT
GTAACTTCCTCTAGCCCATCAGCCGGCGGAATTTGCACCGGCCTTGGCAT
TGCTCCAAGAGTTGTGGGTGATCTAATTGGCGTGGTAAAAGCATACACTA
CGAGAGTTGGTTCTGGTCCTTTCCCGACGGGAATTTTGGGCCAAGGGGGT
GACCAC
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