CV712273

Overview
NameCV712273
Unique NameCV712273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712273 vs. ExPASy Swiss-Prot
Match: MD1L1_HUMAN (Mitotic spindle assembly checkpoint protein MAD1 OS=Homo sapiens GN=MAD1L1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.272e-15
Identity = 58/195 (29.74%), Postives = 105/195 (53.85%), Query Frame = -2
Query:  241 GDFSSENTKVLRM-VNTLAVDNEA-KQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYES-SNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS 810
            GD+    TKVL M +N  +V  +  ++    LQ E ++ +  L+A+E   +   D      S  S K + +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +  E+Q         + L S+YA+   + L F+  S S + + + +      +   +++ +R+ +SIPAF ++LT+E F+R+T++
Sbjct:  533 GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ---------YRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 718          
BLAST of CV712273 vs. ExPASy Swiss-Prot
Match: MD1L1_CRIGR (Mitotic spindle assembly checkpoint protein MAD1 OS=Cricetulus griseus GN=MAD1L1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.680e-11
Identity = 56/195 (28.72%), Postives = 101/195 (51.79%), Query Frame = -2
Query:  247 GDFSSENTKVLRM-VNTLAVDNEAKQTIEA-LQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEY---ESSNTNIMVNDYT-SQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRT 810
            GD++   TKVL M +N  ++  + +Q   A LQ E ++ +  + A+E       D         S ++ +L++Q+ + E + +R K VF  +I  FR+ C  L GY+I V  E+Q         + L S YA+   + L F+      S   ++  +++ S PE+   +++ + + +SIPAF + LT+E F+R+T
Sbjct:  533 GDYNQSRTKVLHMSLNPASMARKRQQEDHARLQGECERLRGLVHALERGGPIPADLEVASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTENQ---------YRLTSRYAEHQSDCLIFKATGPSGSKMQLLETEFSRSVPEL---IELHLLQQDSIPAFLSALTIELFSRQT 715          
BLAST of CV712273 vs. ExPASy Swiss-Prot
Match: MD1L1_MOUSE (Mitotic spindle assembly checkpoint protein MAD1 OS=Mus musculus GN=Mad1l1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.742e-11
Identity = 54/195 (27.69%), Postives = 101/195 (51.79%), Query Frame = -2
Query:  247 GDFSSENTKVLRM-VNTLAVDNEAK-QTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGKITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEY---ESSNTNIMVNDYT-SQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRT 810
            GD++   TKVL M +N +++  + + +  + LQ E ++ +  + A+E       D         S ++ +L++Q+ + E + +R K VF  +I  FR+ C  L GY+I V  E Q         + L S YA+   + L F+      S   ++  +++ S PE+   +++ + + +SIPAF + LT+E F+R+T
Sbjct:  533 GDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECERLRGLVHALERGGPIPADLEAASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTESQ---------YRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPEL---IELHLLQQDSIPAFLSALTIELFSRQT 715          
The following BLAST results are available for this feature:
BLAST of CV712273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MD1L1_HUMAN4.272e-1529.74Mitotic spindle assembly checkpoint protein MAD1 O... [more]
MD1L1_CRIGR1.680e-1128.72Mitotic spindle assembly checkpoint protein MAD1 O... [more]
MD1L1_MOUSE3.742e-1127.69Mitotic spindle assembly checkpoint protein MAD1 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C14_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712273 ID=CV712273; Name=CV712273; organism=Citrus sinensis; type=EST; length=814bp
GAAAAATCAATAAAATTGCAAGCAAAGAACAAATTGTTTGTCGTTTTATG
GTTTTCAATCAAAATTCAAAACCAACTACAACTTTTGAGATAAAAAGTCT
GCAAAGAATGTGTGCTTGGTCGCCTGCATCTATCGAAAACATAATGTCAC
AACTTATATTCAAGCCAAGTAATATACAACTTTTTGAGATAAAAGTCTAA
AAGTGACCGAAATGTATTTCAGTTCTATCTATTGAGATTATGACAAAGTT
CGCCTGTTGAAAGATTCCACCGTCAAGTTAGCGGTGAAAGCCGGAATTGA
GTTCATCTTCCGAACAAATATGTCCACCTGACGAGAAATCTCAGGCTGAG
AAGTGTAATCATTCACCATAATGTTTGTATTGCTTGATTCATATTCAAAT
TCAAGCTTCTCATCATCACCCTGAGCATAGATGGATTGCAAAGTAAAATG
TGTTACAGGGATTCCATTAGCACGTTGGTGCTCATCCATAACAATCTTGT
AACCAAATAGTTCACAGCAAGCTCTCCTGAAAACTGAGATTCTATCTGCA
AAAACGGTCTTATATCTTTCTTCACGTTTTTCAAGTGTTGCAATTTGCTC
TTTTAACTGCGTTATCTTTCCAGATATATAGGAGTCTACCAATTTTCCAG
TATCACCTGACTGACTTTTCAACTCTTCAACAGCTTGTAGTTTTTCCTTC
GTCTTCTGTAATTCAGTCTGTAAAGCCTCAATAGTTTGCTTTGCTTCATT
ATCAACTGCAAGAGTATTAACCATTCGCAACACTTTCGTATTTTCTGAGG
AAAAATCACCATGA
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