CV712272

Overview
NameCV712272
Unique NameCV712272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV712272 vs. ExPASy Swiss-Prot
Match: MD1L1_HUMAN (Mitotic spindle assembly checkpoint protein MAD1 OS=Homo sapiens GN=MAD1L1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.284e-13
Identity = 56/188 (29.79%), Postives = 102/188 (54.26%), Query Frame = 3 
Query:   18 TKVLRM-VNTLAVDNEA-KQTIEALQTELQKTKEKLQAVEELKSQSGDTGKLVDSYISGK-ITQLKEQIATLEKREERYKTVFADRISVFRRACCELFGYKI-VMDEHQRANGIPVTHFTLQSIYAQGDDEKLEFEYES-SNTNIMVNDYTSQPEISRQVDIFVRKMNSIPAFTANLTVESFNRRTLS 566
            TKVL M +N  +V  +  ++    LQ E ++ +  L+A+E   +   D      S  S K + +LK+Q+ + E + +R K VF  +I  FR+AC  L GY+I +  E+Q         + L S+YA+   + L F+  S S + + + +      +   +++ +R+ +SIPAF ++LT+E F+R+T++
Sbjct:  540 TKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQ---------YRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 718
The following BLAST results are available for this feature:
BLAST of CV712272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MD1L1_HUMAN2.284e-1329.79Mitotic spindle assembly checkpoint protein MAD1 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C14_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712272 ID=CV712272; Name=CV712272; organism=Citrus sinensis; type=EST; length=805bp
GATTTTTCCTCAGAAATACGAAAGTGTTGCGAATGGTTAATACTCTTGCA
GTTGATAATGAAGCAAAGCAAACTATTGAGGCTTTACAGACTGAATTACA
GAAGACGAAGGAAAAACTACAAGCTGTTGAAGAGTTGAAAAGTCAGTCAG
GTGATACTGGAAAATTGGTAGACTCCTATATATCTGGAAAGATAACGCAG
TTAAAAGAGCAAATTGCAACACTTGAAAAACGTGAAGAAAGATATAAGAC
CGTTTTTGCAGATAGAATCTCAGTTTTCAGGAGAGCTTGCTGTGAACTAT
TTGGTTACAAGATTGTTATGGATGAGCACCAACGTGCTAATGGAATCCCT
GTAACACATTTTACTTTGCAATCCATCTATGCTCAGGGTGATGATGAGAA
GCTTGAATTTGAATATGAATCAAGCAATACAAACATTATGGTGAATGATT
ACACTTCTCAGCCTGAGATTTCTCGTCAGGTGGACATATTTGTTCGGAAG
ATGAACTCAATTCCGGCTTTCACCGCTAACTTGACGGTGGAATCTTTCAA
CAGGCGAACTTTGTCATAATCTCAATAGATAGAACTGAAATACATTTCGG
TCACTTTTAGACTTTTATCTCAAAAAGTTGTATATTACTTGGCTTGAATA
TAAGTTGTGACATTATGTTTTCGATAGATGCAGGCGACCAAGCACACATT
CTTTGCAGACTTTTTATCTCAAAAGTTGTAGTTGGTTTTGAATTTTGATT
GAAAACCATAAAACGACAAACAATTTGTTCTTTGCTTGCAATTTTATTGA
TTTTT
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