CV712267

Overview
NameCV712267
Unique NameCV712267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10917 contig Csv1_Contig10917:533..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712267 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  411 RNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 719
            RN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE+P+    S    +A+ +    E  F  F+G   RLDGK    +P P P
Sbjct:  147 RNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSPSP 248          
BLAST of CV712267 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  411 RNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 719
            RN++C+TTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEP++P+    S    +A+ +    E  F  F+G   RLDGK    +P P P
Sbjct:  147 RNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPKRPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGKKKGVEPSPSP 248          
BLAST of CV712267 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = -2
Query:  411 RNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGKPLTYQPPPVP 719
            RN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE+ +    S    +A+ +    E  F  F+G   RLDGK    +P P P
Sbjct:  147 RNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEES-TEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSP 248          
BLAST of CV712267 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 52/167 (31.14%), Postives = 74/167 (44.31%), Query Frame = -2
Query:  309 RNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKE---------------------------PEKPIASASSRATAKAEEASVETEPKFSPFTGVARRLDGK---PLTYQPPPVPSLGSKDKQPATSNGTGQPSAGSTSQNAARQSQGK 719
            R ++ LT  D IM+ YNN KYY+ ++E KP+NAISIIE D  VDFAPP+D KE                             KPI     +      ++  + EPKF  F G   RLDGK   PL   P  + +  + +     +N     +  +++ N  +    K
Sbjct:  151 RKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKEATSPSTSSPGSHVSGPSKGLTFGPASTSAKPIPGGKKKKDESDSDSDSDDEPKFKAFAGTGARLDGKVGTPLGTSPKTLNTNNNNNNNNNNNNNNNNNNNNNSNNNNTKNEDTK 317          
BLAST of CV712267 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 41/100 (41.00%), Postives = 54/100 (54.00%), Query Frame = -2
Query:  441 RNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASASSRATAK-------AEEASVETEPKFSPFTGVARRLDGK 719
            RN++CLT GD I + YN K Y + ++ETKP NA+SIIE D  V+F  P+ YK+  +  AS S +  A        A   +   E     F G   RLDGK
Sbjct:  144 RNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGK 243          
The following BLAST results are available for this feature:
BLAST of CV712267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UFD1_RAT2.300e-1946.60Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE1.142e-1844.66Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN1.947e-1845.63Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_DICDI2.153e-1731.14Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_DROME1.223e-1241.00Ubiquitin fusion degradation protein 1 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C11_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712267 ID=CV712267; Name=CV712267; organism=Citrus sinensis; type=EST; length=720bp
GTTTCTTTTTGCCTTCATTTTGACATAATATACTAAAGTTGCATTTTTCC
ATAATACAACACTCAGATAATTGCAGTTATGTAGTTTCTTTGATCCATAA
AGGACAAGTAAAGGGCACTGATGACCTAAAGGCAATAAATACTGGCTGTC
CAATAAATTAATCAACCCTTCAATGAGTACTTCTTCCCCGTAAAAGGCTG
GAACTTTGGCTCCTCTTTCTTTTCAGGCTGCTCCTGTTTTATCTCTTTTT
CAGCTACCGGCTTTTGTGTTTCCTTAGGATGGAGGCTTGCATTTGATCCA
AACACGAGCTTTCCCTGAGACTGTCTTGCAGCATTTTGTGAAGTAGACCC
TGCAGATGGCTGCCCAGTACCATTAGAAGTGGCAGGTTGCTTGTCTTTGG
ACCCTAAGGAAGGAACAGGAGGAGGTTGATATGTCAAAGGTTTCCCATCC
AACCGTCTAGCTACTCCAGTAAAAGGGCTGAATTTTGGTTCGGTCTCAAC
AGAAGCCTCTTCAGCTTTTGCTGTTGCCCTACTTGAAGCAGATGCAATTG
GTTTTTCAGGTTCCTTATAATCCAGAGGAGGTGCAAAATCTACCTCACAG
TCAGTCTCAATGATGCTTATTGCATTAGAAGGCTTTGTCTCTATAATGTC
AATGTAATATTTCTTATTGTTATATGCCACCATAATACTGTCCCCAGTGG
TCAAGCAGGAATAATTCCTT
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