CX302456

Overview
NameCX302456
Unique NameCX302456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_DICDI (Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium discoideum GN=rnrA PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.916e-72
Identity = 131/188 (69.68%), Postives = 158/188 (84.04%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKI-EKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILRDSK 563
            PS RW+W  LK  I  K G+RNSLL+APMPTAST+QILGNNE  EP+TSN+Y+RRVLAGEFT+VNK LL+DL+E GIWS +++NQI+A RGSIQ +  IP D+KELYKTVWEI+Q+++ID AADRGAFI QSQS N+ + EPT A+LTSMHFY+W+KGLKTGMYYLRT P ADAIQFTVDP + +  K
Sbjct:  602 PSSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPIVSQTPK 789          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_HUMAN (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.613e-71
Identity = 125/187 (66.84%), Postives = 154/187 (82.35%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILRDSK 563
            P+D W W  LK+KI KYGIRNSLL+APMPTASTAQILGNNES EP+TSN+Y RRVL+GEF +VN +LLKDL ERG+W E+++NQI+A  GSIQ +  IP D+K+LYKTVWEI QK+++  AA+RGAFI QSQSLNIH+ EP   +LTSMHFY W++GLKTGMYYLRT P A+ IQFT++   L+D +
Sbjct:  575 PTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_PONAB (Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 4.719e-71
Identity = 125/187 (66.84%), Postives = 154/187 (82.35%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILRDSK 563
            P+D W W  LK+KI KYGIRNSLL+APMPTASTAQILGNNES EP+TSN+Y RRVL+GEF +VN +LLKDL ERG+W E+++NQI+A  GSIQ +  IP D+K+LYKTVWEI QK+++  AA+RGAFI QSQSLNIH+ EP   +LTSMHFY W++GLKTGMYYLRT P A+ IQFT++   L+D +
Sbjct:  575 PTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_MOUSE (Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 4.719e-71
Identity = 124/187 (66.31%), Postives = 155/187 (82.89%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILRDSK 563
            P+D W W  LK+KI KYGIRNSLL+APMPTASTAQILGNNES EP+TSN+Y RRVL+GEF +VN +LLKDL ERG+W+++++NQI+A  GSIQ +  IP D+K+LYKTVWEI QK+++  AA+RGAFI QSQSLNIH+ EP   +LTSMHFY W++GLKTGMYYLRT P A+ IQFT++   L+D +
Sbjct:  575 PTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNKEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_CAEEL (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.050e-71
Identity = 122/187 (65.24%), Postives = 160/187 (85.56%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILRDSK 563
            P+D+  W  L++KI K+GIRNSLL+APMPTASTAQILGNNES EP+TSN+Y+RRVL+G+F +VN ++LKDLVERG+W+++++N+++A+ GSIQ +  IP+DIKELY+TVWEI QK II+ AADRGA+I QSQSLNIHM +P+ A +TSMHFY W+KGLKTGMYYLRT P  +A+QFTVD   L+ ++
Sbjct:  581 PTDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTNQ 767          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_DANRE (Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.051e-70
Identity = 124/187 (66.31%), Postives = 155/187 (82.89%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILRDSK 563
            P+D W W  LK+KI   G+RNSLLLAPMPTASTAQILGNNES EP+TSN+Y+RRVL+GEF +VN +LLKDL ERG+W+E+++NQI+A  GSIQ +  IP D+KELYKTVWEI QK+I+  AADRGA+I QSQSLNIH+ EP   +LTSMHFY W++GLKTGMYYLRT P A+ IQFT++   L++++
Sbjct:  575 PTDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQ 761          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_NEUCR (Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa GN=rnr-1 PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 2.192e-68
Identity = 124/184 (67.39%), Postives = 147/184 (79.89%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILR 554
            P++ W W  LK  I+KYG+RNSLLLAPMPTAST+QILGNNE  EP+TSN+Y RRVLAGEF VVN +LL+DLVE G+WS+ ++N+I+A+ GSIQ +  IP DIK LYKTVWEI Q++I+  AADRGAFI QSQSLNIHM EPT  ++TSMHF  W+ GLKTGMYYLRT   A  IQFTVD   LR
Sbjct:  576 PTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEALR 759          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_SCHPO (Ribonucleoside-diphosphate reductase large chain OS=Schizosaccharomyces pombe GN=cdc22 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 2.863e-68
Identity = 121/184 (65.76%), Postives = 151/184 (82.07%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILR 554
            P+D W W  LK+KI K+GIRNSLL+APMPTAST+QILG NE  EP+TSNMY RRVL+GEF +VN +LLKDLVER +W+E ++N+++   GSIQ +  IP D+K+LYKTVWEI QK++ID AADRG FI QSQSLNIH+ +P+  ++TSMHFY W+KGLKTGMYYLRT+  + AI+FTVDP  LR
Sbjct:  574 PTDLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPVALR 757          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_PLAF4 (Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 4.884e-68
Identity = 123/182 (67.58%), Postives = 150/182 (82.42%), Query Frame = 3
Query:   15 WHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVDPTILRDS 560
            W W+ LK KI K+G+RNSLLLAPMPTAST+QILGNNES EP+TSN+Y RRVL+GEF VVN +LLKDL +RG+W E ++ Q++A  GSIQ +S IP D+KELYKTVWEIKQK+IID AADRG FI QSQSLNI++ +PT A+L+SMHFY W KGLKTG YYLRT    DAI+FTVD  + +++
Sbjct:  579 WDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNA 760          
BLAST of CX302456 vs. ExPASy Swiss-Prot
Match: RIR1_VACCW (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Western Reserve) GN=VACWR073 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.203e-66
Identity = 122/192 (63.54%), Postives = 153/192 (79.69%), Query Frame = 3
Query:    3 PSDRWHWNGLKQKIEKYGIRNSLLLAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKYLLKDLVERGIWSEQVRNQIMADRGSIQRVSVIPADIKELYKTVWEIKQKSIIDQAADRGAFICQSQSLNIHMGEPTTARLTSMHFYAWRKGLKTGMYYLRTLPKADAIQFTVD-----PTILRDSK 563
            PSD W+W  LK KI  YG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y RRVL+GEF VVN +LL+ L ER +W+++++N+IMAD GSIQ  + +P DIK +YKT+WEI QK+II  AADRGAFI QSQS+NIH+ +P+ ++LTSMHFY W  GLKTGMYYLRT P +  IQFT+D     P ++ DS+
Sbjct:  574 PSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQNTN-LPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKIKPPVVCDSE 764          
The following BLAST results are available for this feature:
BLAST of CX302456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RIR1_DICDI1.916e-7269.68Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_HUMAN3.613e-7166.84Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_PONAB4.719e-7166.84Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_MOUSE4.719e-7166.31Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_CAEEL8.050e-7165.24Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DANRE1.051e-7066.31Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_NEUCR2.192e-6867.39Ribonucleoside-diphosphate reductase large chain O... [more]
RIR1_SCHPO2.863e-6865.76Ribonucleoside-diphosphate reductase large chain O... [more]
RIR1_PLAF44.884e-6867.58Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCW1.203e-6663.54Ribonucleoside-diphosphate reductase large subunit... [more]

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Properties
Property NameValue
Genbank descriptionC08021A01SK PhyRootSw1 Citrus sinensis cDNA clone C08021A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302456 ID=CX302456; Name=CX302456; organism=Citrus sinensis; type=EST; length=565bp
TGCCTTCGGATAGATGGCATTGGAACGGTCTGAAACAAAAAATCGAGAAG
TACGGAATTCGAAATTCTCTGTTGCTCGCGCCAATGCCGACCGCTTCCAC
CGCCCAGATTTTGGGAAACAATGAGTCAACTGAACCCTTTACTTCCAATA
TGTACAACAGACGAGTTCTAGCTGGCGAATTTACAGTTGTTAATAAATAT
TTGTTGAAAGATTTGGTTGAAAGAGGAATATGGTCAGAACAAGTGCGAAA
TCAAATTATGGCAGATCGTGGCAGTATTCAGAGAGTCTCCGTGATTCCAG
CAGATATTAAAGAGTTATATAAAACTGTATGGGAAATCAAACAAAAGTCT
ATAATTGACCAGGCGGCAGATAGAGGTGCTTTCATTTGCCAGTCCCAATC
ATTGAACATTCATATGGGTGAACCCACCACGGCTAGACTAACTTCAATGC
ATTTTTACGCCTGGAGAAAAGGATTGAAGACTGGAATGTACTATCTACGA
ACTCTCCCGAAAGCTGATGCAATTCAGTTCACCGTAGATCCAACTATTTT
GAGAGACTCAAAATA
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