CX302447

Overview
NameCX302447
Unique NameCX302447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: KC1D_ARATH (Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  398 LKGVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 661
            LKG  PWQG      ++KY+ I EKK  TS++ LC G P EF +YFH    L FD  PDY +LK IFR LF+     +D + +DW ++
Sbjct:  207 LKGSLPWQGLKAGTKKQKYERISEKKVSTSIEALCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYV-FDWTIL 293          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: CKI2_SCHPO (Casein kinase I homolog 2 OS=Schizosaccharomyces pombe GN=cki2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  398 LKGVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 661
            L+G  PWQG    NN+ KY+ I EKK  TS+ ELCAG P EF  Y   V  LEFD+ PDY  L+ +F  +  AN    D + YDW ++
Sbjct:  212 LRGSLPWQGLKAANNKHKYEKISEKKQSTSISELCAGFPNEFSKYMTYVRSLEFDEEPDYAFLQELFDDVLRANGDTNDGV-YDWMLL 298          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: KIN20_CAEEL (Casein kinase I isoform delta OS=Caenorhabditis elegans GN=kin-20 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = -3
Query:  407 KGVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDW 658
            +G  PWQG       +KY+LI EKK  T +D+LCAG PE F  Y +    L F++ PDY +L+N+FR LF   +  YD + +DW
Sbjct:  389 RGTLPWQGLKAVTKRQKYELISEKKISTRVDDLCAGYPEAFAQYLNYCRSLGFEEQPDYGYLRNLFRTLFHRQQFCYDYV-FDW 471          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: DCO_DROME (Discs overgrown protein kinase OS=Drosophila melanogaster GN=dco PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  398 GVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 655
            G  PWQG    N  +KY+ I EKK  TS+  LC G P EF+NY +    + FDQ PDY HL+ +FR LF      YD + +DW ++
Sbjct:  209 GALPWQGLKAANKRQKYERISEKKLSTSIVVLCKGFPSEFVNYLNFCRQMHFDQRPDYCHLRKLFRNLFHRLGFTYDYV-FDWNLL 293          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: CKI1_SCHPO (Casein kinase I homolog 1 OS=Schizosaccharomyces pombe GN=cki1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  398 LKGVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 661
            L+G  PWQG     N++KY+ I EKK  T L ELCAG PEEF  Y H    L FD  PDY++L+ +F ++ L      ++  +DW ++
Sbjct:  212 LRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKV-LERLNTTEDENFDWNLL 298          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: CKI3_SCHPO (Casein kinase I homolog 3 OS=Schizosaccharomyces pombe GN=cki3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.241e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  398 LKGVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 661
            L+G  PWQG     N++KY+ I EKK +T L ELC G P+EFL Y      L +++ PDY++L+++F  L L   +  D+  YDW ++
Sbjct:  215 LRGSLPWQGLKAATNKQKYEKIGEKKQVTPLKELCEGYPKEFLQYMIYARNLGYEEAPDYDYLRSLFDSLLLRINET-DDGKYDWTLL 301          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: KC1A_DROME (Casein kinase I isoform alpha OS=Drosophila melanogaster GN=CkIalpha PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = -3
Query:  398 KGVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 658
            +GV PWQG      ++KY+ I EKK  T ++ LC G P EF  Y +    L F++ PDY +L+ +FR LF      YD I YDW ++
Sbjct:  219 RGVLPWQGMKANTKQQKYEKISEKKMSTPIEVLCKGSPAEFSMYLNYCRSLRFEEQPDYMYLRQLFRILFRTLNHQYDYI-YDWTML 304          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: KC1A_CAEEL (Casein kinase I isoform alpha OS=Caenorhabditis elegans GN=kin-19 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = -3
Query:  398 KGVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 658
            +G  PWQG      ++KY+ I EKK  TS++ LC G P EF  Y      L FD+ PDY +L+ +FR LF      YD   +DW ++
Sbjct:  215 RGTLPWQGLKAATKKQKYEKISEKKMTTSVEHLCKGFPAEFPMYLSYTRGLRFDESPDYMYLRQLFRILFRTLNHQYD-YTFDWTML 300          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: KC1D_XENTR (Casein kinase I isoform delta OS=Xenopus tropicalis GN=csnk1d PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = -3
Query:  398 GVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 655
            G  PWQG       +KY+ I EKK  T ++ LC G P EF  Y +    L FD  PDY++L+ +FR LF      YD + +DW ++
Sbjct:  209 GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYV-FDWNML 293          
BLAST of CX302447 vs. ExPASy Swiss-Prot
Match: KC1D_XENLA (Casein kinase I isoform delta OS=Xenopus laevis GN=csnk1d PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = -3
Query:  398 GVFPWQGFHGKNNEEKYKLIFEKKSMTSLDELCAGLPEEFLNYFH*VTPLEFDQIPDYNHLKNIFRQLFLANKKVYDNILYDWEVI 655
            G  PWQG       +KY+ I EKK  T ++ LC G P EF  Y +    L FD  PDY++L+ +FR LF      YD + +DW ++
Sbjct:  209 GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYV-FDWNML 293          
The following BLAST results are available for this feature:
BLAST of CX302447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
KC1D_ARATH2.046e-1645.45Casein kinase I isoform delta-like OS=Arabidopsis ... [more]
CKI2_SCHPO3.490e-1646.59Casein kinase I homolog 2 OS=Schizosaccharomyces p... [more]
KIN20_CAEEL5.040e-1544.05Casein kinase I isoform delta OS=Caenorhabditis el... [more]
DCO_DROME5.040e-1544.19Discs overgrown protein kinase OS=Drosophila melan... [more]
CKI1_SCHPO2.501e-1442.05Casein kinase I homolog 1 OS=Schizosaccharomyces p... [more]
CKI3_SCHPO1.241e-1340.91Casein kinase I homolog 3 OS=Schizosaccharomyces p... [more]
KC1A_DROME2.766e-1341.38Casein kinase I isoform alpha OS=Drosophila melano... [more]
KC1A_CAEEL8.047e-1340.23Casein kinase I isoform alpha OS=Caenorhabditis el... [more]
KC1D_XENTR1.051e-1239.53Casein kinase I isoform delta OS=Xenopus tropicali... [more]
KC1D_XENLA1.051e-1239.53Casein kinase I isoform delta OS=Xenopus laevis GN... [more]

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Properties
Property NameValue
Genbank descriptionC08020H02SK PhyRootSw1 Citrus sinensis cDNA clone C08020H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302447 ID=CX302447; Name=CX302447; organism=Citrus sinensis; type=EST; length=663bp
GAAAGAGGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTAGGGGGAGTTGATATTATTATTACTT
TTTAACTTTGAAAGAAAAAAATAAATAAATTGGGGGGAAACTTTAGGGGA
CCATCTTAATGGGTTTTCAAAAATTTATTTCTCATTCATCTACCAAGGGA
TGGACTCCTCCTCCTCCTTTTCCTCATCGTCATCATCAAATCTTCCGGCA
TTTCATTCATCTTTCTTTCTCTTCCCAACCAGTTGGACTATACCCCCTTG
AAGCAATTGGTCTCAATCATCCTTTACTTCGAGCTGGATTATTTTCAAGG
GGCATCATCAAAAACTAAAATAGAAATCACTTTTTTGTTTTAAATGCAAT
CACTTCCCAATCATATAATATATTATCATAGACCTTTTTATTTGCTAAAA
ATAATTGTCTAAAAATATTTTTCAAATGATTATAATCAGGGATTTGATCA
AATTCTAATGGTGTTACCTAATGAAAATAATTTAAAAATTCTTCTGGGAG
ACCAGCACATAATTCATCTAACGATGTCATTGATTTTTTCTCAAAGATTA
ATTTATATTTTTCTTCATTATTTTTACCATGGAATCCTTGCCATGGGAAT
ACACCTTTTAAGA
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