CX302443

Overview
NameCX302443
Unique NameCX302443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31
Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 2
Query:   35 RGGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 403
            RGG+G +   P DMG  +P         + I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA   A    +QLASL+L+
Sbjct:  521 RGGSGDV--PPYDMGNNMP---------LTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 2
Query:   50 GMLPVPVDMGAGIPRRDASVGQPMPITA--LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 406
            G++P+P++  A          +P P+T   L++ LA ASP++   +LG+ LYPLVEQ E   AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A   A +  D   +LS +E
Sbjct:  548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.792e-21
Identity = 56/114 (49.12%), Postives = 81/114 (71.05%), Query Frame = 2
Query:    2 NSARGLVPNSARGGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 343
            N   G+  +  +G    ++P+P+D  + I  + A +   +PI+ L+++LA+ASP  +  +LGE LYPLVE+ E    AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct:  535 NGRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 2
Query:   11 RGLVPNSA---RGGAGGM---LPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376
            RG VP      RGG GG    +P+   M  G   R  +VGQP P T +      AL+ A P+QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V     + +++ PA
Sbjct:  583 RGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   23 PNSARGGA---GGMLPVPVDMGAGIPRRDASVGQPMPI----------------TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 364
            PN+A G A   G   P  V+ GA  P      GQPMP                    + ALA ASPE+Q+ +LGE++YP V   + + A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q  +
Sbjct:  504 PNAAGGPAPPAGARPPTGVN-GAPRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2
Query:  122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 400
            P+TA S  LA+A P++Q+ +LGE LYPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   + + A  SL
Sbjct:  541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQSL 628          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  134 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 343
            +++ LANA P++Q+ +LGE LYP++E +  + A K+TGMLLE++ +E+LH++E  EALKAKV EA+ VL+
Sbjct:  556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
The following BLAST results are available for this feature:
BLAST of CX302443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PABP2_ARATH1.120e-3164.23Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH1.122e-2351.24Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH1.792e-2149.12Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_EMENI4.880e-1943.94Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA2.267e-1642.11Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR6.595e-1648.39Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_DROME1.919e-1551.43Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP1_RAT1.919e-1547.06Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE1.919e-1547.06Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_PONAB2.506e-1547.06Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionC08020G09SK PhyRootSw1 Citrus sinensis cDNA clone C08020G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302443 ID=CX302443; Name=CX302443; organism=Citrus sinensis; type=EST; length=604bp
GAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGGGGTGCTGGCG
GTATGCTCCCTGTTCCCGTTGACATGGGCGCTGGCATACCTCGGCGAGAT
GCATCTGTTGGACAACCTATGCCGATAACGGCTTTGTCTACTGCTCTTGC
AAATGCATCACCAGAACAGCAAAGGACGCTGCTGGGTGAAAGTTTATATC
CTCTAGTGGAGCAGCTGGAGCGAGATGCAGCGGCTAAGGTAACGGGAATG
CTCTTGGAGATGGACCAGACAGAGGTTTTGCATCTTCTTGAGTCACCAGA
GGCTTTGAAGGCGAAAGTAGCTGAGGCAATGGAGGTTTTGAGGAGTGTTG
CTCAGCAGCAGGCTAATAATCCAGCAGATCAACTGGCTTCATTGTCCCTG
AATGAAAACCTTGTTTCTTGAGCGCGTTGCTGTCATTGAAGAAGTTTGGA
TTAGTTGTGGTTTCAAACAATTAAAGTCTTTGTTTTTGGCATGGATGGTG
TAGGTGTTTGTGTAGTTTGATCCTGGATATGCTGTAGGATTCTGCTCGGC
CACATGATTTGTTTGCTTGACTGTTCCAATTTTTAAGCGTGGTTGCTGTT
TTCA
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