CX302443
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.120e-31 Identity = 79/123 (64.23%), Postives = 95/123 (77.24%), Query Frame = 2 Query: 35 RGGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 403 RGG+G + P DMG +P + I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L+ Sbjct: 521 RGGSGDV--PPYDMGNNMP---------LTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23 Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 2 Query: 50 GMLPVPVDMGAGIPRRDASVGQPMPITA--LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 406 G++P+P++ A +P P+T L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +LS +E Sbjct: 548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.792e-21 Identity = 56/114 (49.12%), Postives = 81/114 (71.05%), Query Frame = 2 Query: 2 NSARGLVPNSARGGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 343 N G+ + +G ++P+P+D + I + A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR Sbjct: 535 NGRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19 Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 2 Query: 11 RGLVPNSA---RGGAGGM---LPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376 RG VP RGG GG +P+ M G R +VGQP P T + AL+ A P+QQ+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V + +++ PA Sbjct: 583 RGQVPGMGGPMRGGYGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16 Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 2 Query: 23 PNSARGGA---GGMLPVPVDMGAGIPRRDASVGQPMPI----------------TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 364 PN+A G A G P V+ GA P GQPMP + ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q + Sbjct: 504 PNAAGGPAPPAGARPPTGVN-GAPRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16 Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2 Query: 122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 400 P+TA S LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA + + A SL Sbjct: 541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQSL 628
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15 Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 2 Query: 134 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 343 +++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+ Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15 Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 2 Query: 122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376 P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A Sbjct: 544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15 Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 2 Query: 122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376 P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A Sbjct: 544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
BLAST of CX302443 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15 Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 2 Query: 122 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 376 P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ ++A A Sbjct: 544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626 The following BLAST results are available for this feature:
BLAST of CX302443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >CX302443 ID=CX302443; Name=CX302443; organism=Citrus sinensis; type=EST; length=604bpback to top |