CX302439

Overview
NameCX302439
Unique NameCX302439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 264.233 bits (674), Expect = 3.178e-70
Identity = 136/189 (71.96%), Postives = 147/189 (77.78%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFY++ITRA FE LNMDLFR C+ PVEK LRDAKMDK +VH+VVLVGGSTRIPK+Q LLQ+FFNGKE  KSINPDE           ILSG+ +EK                ETAGGVMT LI RNTTIPTKK QVFSTYSDNQPGVLIQVYEGER+ TKDNNLLGKFELSGIPPAPRG
Sbjct:  288 IEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRG 476
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 9.247e-70
Identity = 135/189 (71.43%), Postives = 147/189 (77.78%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFY++ITRA FE LNMDLFR C+ PVEK LRDAKMDK +VH+VVLVGGSTRIPK+Q LLQ+FFNGKE  KSINPDE           ILSG+ +EK                ETAGGVMT LI RNTTIPTKK QVFSTYSDNQPGVLIQVYEGER+ T+DNNLLGKFELSGIPPAPRG
Sbjct:  288 IEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRG 476
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.208e-69
Identity = 136/189 (71.96%), Postives = 146/189 (77.25%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFY++ITRA FE LNMDLFR C+ PVEK LRDAKMDK SVH+VVLVGGSTRIPK+Q LLQ+FFNGKE  KSINPDE           ILSG+ +EK                ETAGG MT LI RNTTIPTKK QVFSTYSDNQPGVLIQVYEGER+ TKDNNLLGKFELSGIPPAPRG
Sbjct:  288 IEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGGMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRG 476
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 3.514e-69
Identity = 133/189 (70.37%), Postives = 145/189 (76.72%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LY G DFY+ ITRA FE +NMDLFR C+ PVEK LRDAKMDK +VHE+VLVGGSTRIPK+Q LLQ+FFNGKE  KSINPDE           ILSG+ +EK                ETAGGVMT LI RNTTIPTKK QVFSTYSDNQPGVLIQV+EGER+ TKDNNLLGKFELSGIPPAPRG
Sbjct:  288 IEIDSLYGGADFYSPITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSTVHEIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRG 476
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 4.589e-69
Identity = 133/189 (70.37%), Postives = 147/189 (77.78%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+L+EG DFYTSITRA FE L  DLFRGCL+PVEKVL+D+K+DK+S+HE+VLVGGSTRIPK+Q LLQEFFNGKE +KSINPDE           ILS +   K                ETAGGVMT LI RNTTIP KK+Q FSTYSDNQPGVLIQVYEGER+MTKDNNLLGKFELSGIPPAPRG
Sbjct:  280 IEIDSLFEGIDFYTSITRARFEELCADLFRGCLDPVEKVLKDSKLDKKSIHEIVLVGGSTRIPKVQQLLQEFFNGKELNKSINPDEAVAYGAAVQAAILSNEGGAKVADLLLLDVAPLSMGLETAGGVMTTLIPRNTTIPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRG 468
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 5.994e-69
Identity = 134/189 (70.90%), Postives = 145/189 (76.72%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFYTSITRA FE LN DLFRG L+PVEK LRDAKMDK  VH++VLVGGSTRIPKIQ LLQ+FFNGKE +KSINPDE           ILSG   E                 ETAGGVMT LI RNTTIPTK++Q F+TYSDNQPGVLIQVYEGER+MTKDNNLLGKFEL+GIPPAPRG
Sbjct:  282 IEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKSLRDAKMDKAQVHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 470
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 259.225 bits (661), Expect = 1.022e-68
Identity = 133/189 (70.37%), Postives = 145/189 (76.72%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFY+ ITRA FE LN+DLFR C+ PVEK LRDAKMDK +VH+VVLVGGSTRIPK+Q LLQ+FFNGKE  KSINPDE           ILSG+ +EK                ETAGGVMT LI RNTTIPTKK QVFSTYSDNQPGVLIQVYEGER+ T+DNNLLGKFELSGIPP PRG
Sbjct:  288 IEIDSLYEGVDFYSPITRARFEELNIDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPGPRG 476
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.022e-68
Identity = 132/189 (69.84%), Postives = 145/189 (76.72%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFYTSITRA FE LN DLFRG L+PVEK LRDAK+DK  +H++VLVGGSTRIPKIQ LLQ+FFNGKE +KSINPDE           ILSG   E                 ETAGGVMT LI RNTTIPTK++Q F+TYSDNQPGVLIQVYEGER+MTKDNNLLGKFEL+GIPPAPRG
Sbjct:  282 IEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 470
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.022e-68
Identity = 132/189 (69.84%), Postives = 145/189 (76.72%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFYTSITRA FE LN DLFRG L+PVEK LRDAK+DK  +H++VLVGGSTRIPKIQ LLQ+FFNGKE +KSINPDE           ILSG   E                 ETAGGVMT LI RNTTIPTK++Q F+TYSDNQPGVLIQVYEGER+MTKDNNLLGKFEL+GIPPAPRG
Sbjct:  282 IEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 470
[Close]
BLAST of CX302439 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.022e-68
Identity = 132/189 (69.84%), Postives = 145/189 (76.72%), Query Frame = 2 
Query:    2 IEIDALYEGQDFYTSITRAMFENLNMDLFRGCLNPVEKVLRDAKMDKRSVHEVVLVGGSTRIPKIQSLLQEFFNGKEPSKSINPDEXXXXXXXXXXXILSGKTDEKXXXXXXXXXXXXXXXXETAGGVMTPLINRNTTIPTKKSQVFSTYSDNQPGVLIQVYEGERSMTKDNNLLGKFELSGIPPAPRG 568
            IEID+LYEG DFYTSITRA FE LN DLFRG L+PVEK LRDAK+DK  +H++VLVGGSTRIPKIQ LLQ+FFNGKE +KSINPDE           ILSG   E                 ETAGGVMT LI RNTTIPTK++Q F+TYSDNQPGVLIQVYEGER+MTKDNNLLGKFEL+GIPPAPRG
Sbjct:  282 IEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 470
The following BLAST results are available for this feature:
BLAST of CX302439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_ARATH3.178e-7071.96Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP72_SOLLC9.247e-7071.43Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7C_PETHY1.208e-6971.96Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP72_ARATH3.514e-6970.37Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HS7C1_DICDI4.589e-6970.37Heat shock cognate 70 kDa protein 1 OS=Dictyosteli... [more]
HSP70_ONCMY5.994e-6970.90Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP7E_SPIOL1.022e-6870.37Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP7C_SAGOE1.022e-6869.84Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT1.022e-6869.84Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB1.022e-6869.84Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08020G05SK PhyRootSw1 Citrus sinensis cDNA clone C08020G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302439 ID=CX302439; Name=CX302439; organism=Citrus sinensis; type=EST; length=573bp
TATTGAAATAGATGCATTATATGAAGGTCAAGACTTTTACACTTCAATTA
CTCGAGCTATGTTCGAAAACTTGAATATGGACCTCTTCAGAGGCTGTTTA
AATCCCGTTGAAAAAGTACTACGAGATGCAAAGATGGACAAAAGATCAGT
CCACGAAGTAGTATTAGTAGGAGGATCAACTCGAATCCCCAAAATCCAAT
CATTATTACAAGAATTCTTCAATGGAAAAGAGCCATCAAAATCAATCAAT
CCAGATGAAGCAGTAGCATATGGAGCAGCGGTGCAAGCGGCAATTCTATC
AGGAAAAACTGACGAGAAATTAGATGAATTATTGTTATTGGACGTTGCTC
CTTTAACTCTTGGATTGGAAACTGCAGGAGGAGTGATGACTCCTTTGATC
AATCGTAACACCACTATTCCCACGAAGAAGTCGCAAGTCTTCTCTACTTA
CTCTGATAATCAACCGGGAGTATTGATTCAAGTGTACGAAGGAGAAAGGT
CGATGACGAAAGATAATAATTTGTTAGGTAAATTCGAATTGAGTGGCATT
CCACCTGCTCCTCGAGGCACTCC
back to top