CV712228

Overview
NameCV712228
Unique NameCV712228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712228 vs. ExPASy Swiss-Prot
Match: PQBP1_BOVIN (Polyglutamine-binding protein 1 OS=Bos taurus GN=PQBP1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:  346 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 564
            S+K A  +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS++K+
Sbjct:  188 SKKAASRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRTKQ 261
[Close]
BLAST of CV712228 vs. ExPASy Swiss-Prot
Match: PQBP1_RAT (Polyglutamine-binding protein 1 OS=Rattus norvegicus GN=Pqbp1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 54/110 (49.09%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:  241 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 564
            ++++  + A+ ++   +   ++    P  +  +  SRK     D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS+SK+
Sbjct:  158 ERERAFDKADREDGKDRRHHRREELAPYPKNKKATSRK-----DEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRSKQ 261
[Close]
BLAST of CV712228 vs. ExPASy Swiss-Prot
Match: PQBP1_MOUSE (Polyglutamine-binding protein 1 OS=Mus musculus GN=Pqbp1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 54/110 (49.09%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:  241 KQQQTSNSANAKEDSGKNGPKQSWKPPMGRGNRKDSRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 564
            ++++  + A+ +E   +   ++    P  +  +  SRK     D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS++K+
Sbjct:  158 ERERAFDKADREEGKDRRHHRREELAPYPKNKKATSRK-----DEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRTKQ 261
[Close]
BLAST of CV712228 vs. ExPASy Swiss-Prot
Match: PQBP1_PONPY (Polyglutamine-binding protein 1 OS=Pongo pygmaeus GN=PQBP1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:  346 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 564
            S+K    +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS++K+
Sbjct:  190 SKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRTKQ 263
[Close]
BLAST of CV712228 vs. ExPASy Swiss-Prot
Match: PQBP1_HUMAN (Polyglutamine-binding protein 1 OS=Homo sapiens GN=PQBP1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:  346 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 564
            S+K    +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS++K+
Sbjct:  190 SKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRTKQ 263
[Close]
BLAST of CV712228 vs. ExPASy Swiss-Prot
Match: PQBP1_GORGO (Polyglutamine-binding protein 1 OS=Gorilla gorilla gorilla GN=PQBP1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:  346 SRKRAFSEDDELDPMDPSSYSDAPRGGWVVGL--KGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQSKK 564
            S+K    +D+ELDPMDPSSYSDAPRG W  GL  +      ADTTA GPLFQQRPYPSPGAVLR NAE AS++K+
Sbjct:  190 SKKAVSRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAE-ASRTKQ 263
The following BLAST results are available for this feature:
BLAST of CV712228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PQBP1_BOVIN4.783e-2068.00Polyglutamine-binding protein 1 OS=Bos taurus GN=P... [more]
PQBP1_RAT6.247e-2049.09Polyglutamine-binding protein 1 OS=Rattus norvegic... [more]
PQBP1_MOUSE6.247e-2049.09Polyglutamine-binding protein 1 OS=Mus musculus GN... [more]
PQBP1_PONPY1.392e-1966.67Polyglutamine-binding protein 1 OS=Pongo pygmaeus ... [more]
PQBP1_HUMAN1.392e-1966.67Polyglutamine-binding protein 1 OS=Homo sapiens GN... [more]
PQBP1_GORGO1.392e-1966.67Polyglutamine-binding protein 1 OS=Gorilla gorilla... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712228 ID=CV712228; Name=CV712228; organism=Citrus sinensis; type=EST; length=729bp
GCCCATGTATCACAATGGGTGCACCCTGGTTCATCAAAGCCTGTTGCATC
AGAACAGTCTGATAGCAATGCTTCGAGAAATACAACTAATGGGATCTGGG
ATAACCCATCATCTGGGCTGGAGAGATGCTTGCACTGCGGTGGTTGGGGA
GTAGGTCTTGTGCAGACGTGGGGTTACTGCAATCACTGTACAAGAGTTCT
CAATCTTCCACAGTGCCAGTACTTGTTGACCAGCTTGAATAAGCAGCAGC
AGACCAGCAATTCTGCAAATGCCAAAGAAGATTCTGGCAAAAATGGACCA
AAACAGAGTTGGAAACCTCCTATGGGAAGAGGAAATAGAAAAGATAGCAG
AAAACGTGCTTTCAGTGAGGATGATGAGTTGGATCCCATGGACCCAAGCT
CTTACTCAGATGCACCCCGCGGTGGCTGGGTTGTTGGCCTAAAAGGAGTG
CAGCCCCGGGCAGCAGACACCACTGCCACGGGTCCACTATTTCAACAGCG
TCCATACCCCTCTCCAGGAGCTGTCTTGAGGAAGAATGCGGAAATTGCTT
CACAATCGAAGAAAAGCAGCCCTCATTTTACAGCAATATCCAAGAGAGGG
GATGGGAGTGATGGACTTGGTGAAGCCGACTGAGGTGCTAAGGACTTTGA
GGAGGGCTTTTTCTCTTCTGCATTGGGTTGGCTGATCTTCAGCTGTTTGA
CTTCATCAAATCATGGAATATTGGAACTA
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