CV712217

Overview
NameCV712217
Unique NameCV712217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.290e-39
Identity = 82/157 (52.23%), Postives = 112/157 (71.34%), Query Frame = -3
Query:  313 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 783
            FNI LQ+LDDGR+TD+QG TV F N ++IMTSNIGS YIL+          + Y+ M+ +V+E  R +FRPEFLNRIDE I+F  LD KE+ +IV++Q+ R+K RL  +KI L  +  A+  L  +G+DP FGARP+KR IQ+ +E +IA AIL+G+
Sbjct:  693 FNIFLQILDDGRVTDAQGHTVDFKNTIIIMTSNIGSQYILDIA-----GDNSRYDEMRHRVMEAMRNSFRPEFLNRIDEVIIFHSLDKKELRQIVQLQVERLKARLDDRKISLRLSDVALDFLAEVGYDPVFGARPLKRAIQRELETQIAKAILRGE 844          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 8.360e-39
Identity = 81/156 (51.92%), Postives = 114/156 (73.08%), Query Frame = -3
Query:  316 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKG 783
            FN++LQ+LDDGR+TDS+GRTV F N ++I+TSNIGS YIL+   +  DS+   YE M+ +V E  R  FRPEFLNR+DE I+F  L   ++ +IV IQ++R+++RL  +K+ L  + EA+  L  +GFDP +GARP+KRVIQ+ +E  IA AIL+G
Sbjct:  693 FNVMLQILDDGRVTDSRGRTVDFKNTILILTSNIGSQYILDV--AGDDSR---YEEMRSRVTEALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKRVIQRELETAIAKAILRG 843          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.432e-38
Identity = 83/159 (52.20%), Postives = 115/159 (72.33%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FNILLQ+LDDGR+TDS GRTV F N V+I+TSN+GS  ILE LQ     K   YE ++ +V ++ +Q FRPEFLNR+DE +VF+PL  ++I +IVEIQ++ ++ RL +K+I L  T+ A   L   G+DP FGARP++RVIQ+ +E  +A  IL G++K
Sbjct:  677 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQ-----KGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVK 830          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.432e-38
Identity = 83/159 (52.20%), Postives = 115/159 (72.33%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FNILLQ+LDDGR+TDS GRTV F N V+I+TSN+GS  ILE LQ     K   YE ++ +V ++ +Q FRPEFLNR+DE +VF+PL  ++I +IVEIQ++ ++ RL +K+I L  T+ A   L   G+DP FGARP++RVIQ+ +E  +A  IL G++K
Sbjct:  677 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQ-----KGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVK 830          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.432e-38
Identity = 80/157 (50.96%), Postives = 112/157 (71.34%), Query Frame = -3
Query:  313 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGD 783
            FN+ LQ+LDDGR+TDSQGRTV F N ++IMTSNIGS YIL+   +  DS+   Y  M  +V+E  R  FRPEFLNR+DE+I+F  L   ++ +IV++Q+ R++ RL  + I L  T++A+  L  +G+DP +GARP+KR IQ+ +E  IA AIL+GD
Sbjct:  692 FNVFLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYILDV--AGDDSR---YSEMYNRVMEAMRAHFRPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRLSDRHITLSLTEKAIDFLAEVGYDPVYGARPLKRAIQKQLETPIAKAILRGD 843          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.149e-38
Identity = 80/158 (50.63%), Postives = 115/158 (72.78%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FN+LLQ+LDDGR+TD QGRTV F N V+I+TSNIGS  I E +QS Q      YE ++++V  + +Q FRPEFLNR+DE +VF+PL  ++I+ IV+IQ+  V+ RL +++I L  ++EA+  L   G+DP FGARP+KRVIQ+ +E  ++  IL G++
Sbjct:  677 FNVLLQVLDDGRLTDGQGRTVDFRNTVIILTSNIGSPLIFEGIQSGQS-----YETIRERVFGVLQQHFRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQRELETPLSRKILAGEV 829          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.243e-38
Identity = 80/158 (50.63%), Postives = 108/158 (68.35%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y  MK+ V+ +  Q FRPEF+NRIDE +VF PL  + I+ I +IQ+ R+  RL+++  ++H + EA+ LL   G+DP +GARP+KR IQQ +EN +A  IL G++
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD------YGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.243e-38
Identity = 80/158 (50.63%), Postives = 108/158 (68.35%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N VVIMTSN+GS  I E    +       Y  MK+ V+ +  Q FRPEF+NRIDE +VF PL  + I+ I +IQ+ R+  RL+++  ++H + EA+ LL   G+DP +GARP+KR IQQ +EN +A  IL G++
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD------YGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGEL 838          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.243e-38
Identity = 76/159 (47.80%), Postives = 113/159 (71.07%), Query Frame = -3
Query:  307 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDIK 783
            FN++LQ+LDDGR+TD+QG  V F N ++IMTSN+GS YIL+   +  DS+   YE M+ +V+++ R+ FRPEFLNR+DE I+F  L   E+  IV+IQ+  +  RL+++K+ L  T +A+  L  +G+DP +GARP+KR +Q+ +E  IA  IL+GD K
Sbjct:  693 FNVMLQILDDGRLTDAQGHVVDFKNTIIIMTSNLGSQYILDV--AGDDSR---YEEMRSRVMDVMRENFRPEFLNRVDETIIFHGLQKSELRSIVQIQIQSLATRLEEQKLTLKLTDKALDFLAAVGYDPVYGARPLKRAVQKYLETAIAKGILRGDYK 846          
BLAST of CV712217 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.577e-37
Identity = 80/158 (50.63%), Postives = 107/158 (67.72%), Query Frame = -3
Query:  310 FNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSVQDSKEAVYEVMKKQVVELARQTFRPEFLNRIDEYIVFQPLDSKEISKIVEIQMNRVKDRLKQKKIDLHYTKEAVTLLGILGFDPNFGARPVKRVIQQLVENEIAVAILKGDI 783
            FNILLQ+LDDGR+TD QGRTV F N V+IMTSN+GS  I E    +       Y  MK  V+ +   +FRPEFLNRIDE +VF PLD++ I  I  IQ+  ++ RL +K   L  T EA++L+  +GFDP +GARP+KR +QQ +EN +A  +L+GD+
Sbjct:  687 FNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDIIQEGFGHLS------YSEMKSAVMNVVTHSFRPEFLNRIDESVVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITDEALSLIAEIGFDPVYGARPLKRALQQEMENPLAQKLLRGDL 838          
The following BLAST results are available for this feature:
BLAST of CV712217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
CLPB2_ANASP1.290e-3952.23Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB1_SYNE78.360e-3951.92Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB_THET82.432e-3852.20Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET22.432e-3852.20Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB1_THEEB2.432e-3850.96Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB_MEIRU4.149e-3850.63Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_SALTY9.243e-3850.63Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI9.243e-3850.63Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB2_SYNY39.243e-3847.80Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_SHEON1.577e-3750.63Chaperone protein clpB OS=Shewanella oneidensis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712217 ID=CV712217; Name=CV712217; organism=Citrus sinensis; type=EST; length=893bp
AGGAAAAGTTTGATATATTTTACAAATTAAAGGCATGAACATANTCCTTC
TCCAAACTAAATTTATAACACAAGAAAAGGGAAGTGTACCTTGGATGCCA
CCGTGATTGTACCCAGATATCAGCAAAAGACCAAACAAAGTTTTTATTGA
GTTTATTTACCACTCCAAAAACAAGTATTAGTCATTGGCAACCATTGCAT
CAATGGAGGAAGAGCTCTCCAATTTCTTGATGCACAATTTGTTTCGTGGA
GGAAGGTCTTTGGCTGATGGGGAGTCATCAACATCAATGATAACTGAGTC
TTCCTCCTTAATATCTCCTTTCAAGATGGCCACCGCAATTTCATTTTCAA
CCAACTGCTGTATTACCCTCTTAACTGGCCTTGCCCCAAAGTTAGGGTCA
AAACCCAATATCCCTAGAAGAGTAACAGCTTCCTTTGTATAGTGAAGATC
GATCTTCTTTTGTTTCAGCCTGTCTTTCACTCGGTTCATCTGTATTTCAA
CAATTTTGCTGATTTCTTTGGAGTCCAAAGGCTGGAACACAATGTACTCA
TCAATTCTATTCAAAAATTCTGGCCGAAATGTTTGTCTAGCCAATTCCAC
AACTTGCTTTTTCATCACCTCATAAACAGCTTCCTTGCTATCTTGTACAC
TTTGGAGAGTTTCAAGTATATAGTGAGACCCAATATTTGAAGTCATTATC
ACGACACAGTTAGTAAAACTGACAGTCCTACCCTGAGAATCAGTTATCCT
TCCATCATCCAACAACTGTAACAATATGTTGAAGGGAGATCATAGTTCCA
TATTTGAGTTCAGCAGCACGATTCANGTCATAGTCACGCTCAGCAGCTTC
CATTTCTAGGGTAACTCTATCAATCTCTTCTTTAATTGAACGT
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