CV712206

Overview
NameCV712206
Unique NameCV712206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712206_ssr422 microsatellite CV712206_ssr422:422..433. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.046e-44
Identity = 93/102 (91.18%), Postives = 95/102 (93.14%), Query Frame = -1
Query:  134 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 439
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 GDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 2.673e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 3.490e-44
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.559e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.559e-44
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = -1
Query:  134 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 439
            GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   36 GDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.559e-44
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = -1
Query:  134 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 439
            GD       K++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 GDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 177.563 bits (449), Expect = 4.559e-44
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = -1
Query:  134 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 439
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 7.776e-44
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = -1
Query:  134 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 439
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 7.776e-44
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = -1
Query:  134 GDXXXXXXXKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 439
            GD       KS+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CV712206 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.262e-43
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = -1
Query:  134 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 409
            S ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132          
The following BLAST results are available for this feature:
BLAST of CV712206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_GOSHI2.046e-4491.18Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B1_MEDTR2.673e-4498.91Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B3_MEDTR3.490e-4497.83Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_CAPAN4.559e-4498.91Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B3_SOLLC4.559e-4490.20Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B1_ARATH4.559e-4490.20Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B11_ARATH4.559e-4490.20Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B7_ARATH7.776e-4490.20Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH7.776e-4490.20Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B9_ARATH2.262e-4397.83Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B03_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712206 ID=CV712206; Name=CV712206; organism=Citrus sinensis; type=EST; length=619bp
AAATAAGTCATTTTCTATCAGCACCATGCCATTTCACCAATACTAACTAC
TTACATTATTACTCCAAGAAAGGACACAGTAAACATCACTAACCCCAATT
TCATCGCACATAGTCAAACCTAACCCTAATTTAAGACGAGGTGAACTTGG
TAACCGCCTTGGTACCCTCAGAAACGGCATGCTTAGCCAGCTCACCAGGA
AGCACAAGTCTCACAGCGGTCTGGATTTCACGAGAAGTTATCGTCGGCTT
CTTGTTGTACCTTGCCAGCCTGGAAGATTCCTGAGCAAGCTTCTCGAAAA
TATCGTTGATGAAACTGTTCATAATTCCCATAGCCTTGCTCGAGATTCCG
ATATCTGGATGGACTTGCTTCAGGACTTTGAATATGTAGATCTTGTACGT
CTCAATGCTCTTCTTCGTGCGCTTCTTCTTCTTGTCACCGGCTGCGGCTT
CCTTCGGAAGCTTCTTCCCGGCCTTCGGCTTCTTCTCGGCAGGCGCCTTC
TCCGCCACCGGTGTCTTCTTCTCCTCCGCTGGCTTCTTCTCCGCCTTTGG
TGCCATCGTCAGAAAAAACTGCGGGTTCGCGAGGAATTGAAAGTAAAAGA
CAAATTGTTAGATTCGCCT
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