CV712202

Overview
NameCV712202
Unique NameCV712202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4257 contig Csv1_Contig4257:246..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.156e-82
Identity = 148/187 (79.14%), Postives = 169/187 (90.37%), Query Frame = -3
Query:  202 QTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPIL 762
            QTY+LDANL LLRLYQFEPER+S QIV+RILIKALMAMP PDFSLCLFLIPE VQME+QFKTLIVLSHYLET RFR FWDEA+K+RNI++ VPGFEQAIQS+AIHVLSLTYQK+PR VLAEAIN++GL+LDKFLEH  AN GW++E   + SQLIVLP NEFNHPELKKN A+++P EH+TRIFP+L
Sbjct:   40 QTYNLDANLSLLRLYQFEPERLSVQIVSRILIKALMAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIE-KGARSQLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.496e-80
Identity = 143/189 (75.66%), Postives = 168/189 (88.89%), Query Frame = -3
Query:  199 AQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPILG 765
            +QTYSL+ NLCLLRLYQFEPERM+T IVARIL+KALMAMP PDFSLCLFLIPERVQME+QFK+LIVLSHYLETGRF+ FWDEAAK+R+I+EAVPGFEQAIQ++A H+LSL+YQK+PR+VLAEA+N+ G SLDKF+E Q  N GWI+E +  +   IVLP NEFNHPELKKN  +++PLEHI RIFPILG
Sbjct:   41 SQTYSLEVNLCLLRLYQFEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_BOVIN (Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = -3
Query:  214 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 756
            Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   42 YDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDSQLKVWMSKYGW--SADES-GQIFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_MOUSE (Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = -3
Query:  214 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 756
            Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   42 YDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDNQLKVWMSKYGW--SADES-GQVFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_HUMAN (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = -3
Query:  214 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 756
            Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   42 YDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGW--SADES-GQIFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_DANRE (Eukaryotic translation initiation factor 3 subunit K OS=Danio rerio GN=eif3k PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.275e-22
Identity = 59/181 (32.60%), Postives = 98/181 (54.14%), Query Frame = -3
Query:  214 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 756
            Y L+ANL +L+LYQF      T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L + LET  F+ FW    ++R++++ + GFE++++ F  HV+ +TYQ I   +LAE +   G  LD  ++      GW    +    Q+ +    E   P   KN+ + I  E ++ I
Sbjct:   43 YDLEANLAVLKLYQFNLAYFQTTVTAQILLKALTNLPHTDFTLCKCMIDQTHQEERPIRQILYLGNLLETCHFQSFWASLEENRDLIDGITGFEESVRKFICHVVGITYQNIEYRLLAEML---GDPLDTQVKVWMNKYGWT---ENEDGQIFIHNQEESVKP---KNIVEKIDFESVSSI 214          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_XENTR (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus tropicalis GN=eif3k PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21
Identity = 58/181 (32.04%), Postives = 97/181 (53.59%), Query Frame = -3
Query:  214 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 756
            Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ ++++ + GFE +++ F  HV+ +TYQ I R +LAE +   G   +  L    +  GW+   +    ++ V    E   P   KN+ + I  + ++ I
Sbjct:   42 YDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQSFWQALDENLDLIDGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSEPQLRVWMSKYGWM---ESENGKIFVCNQEENIKP---KNIVEKIDFDSVSGI 213          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_XENLA (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus laevis GN=eif3k PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21
Identity = 58/181 (32.04%), Postives = 97/181 (53.59%), Query Frame = -3
Query:  214 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 756
            Y L+ANL +L+LYQF P    T + A++L+KAL  +P  DF+LC  +I +  Q +   + ++ L   LET  F+ FW    ++ ++++ V GFE +++ F  HV+ +TYQ I R +LAE +   G   +  L    +  GWI   +    ++ V    E   P   KN+ + I  + ++ I
Sbjct:   42 YDLEANLAVLKLYQFNPAFFQTTVTAQVLLKALTNLPHTDFTLCKCMIDQAHQEDRPIRQILYLGDLLETCHFQSFWQALDENLDLIDGVTGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSEPQLRVWMSKYGWI---ESENGKIFVCNQEENIKP---KNIVEKIDFDSVSGI 213          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_NEMVE (Eukaryotic translation initiation factor 3 subunit K OS=Nematostella vectensis GN=v1g170558 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.772e-21
Identity = 58/182 (31.87%), Postives = 101/182 (55.49%), Query Frame = -3
Query:  214 YSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 756
            Y LDANL +L+LYQF P    T ++++IL+KALM +P  DF +C  +I + +Q +   K +I+L+  LET  F   W    +  ++V+ V GF  AI+++  +V+ +TYQ I  ++ +E +  L+G  L  +++ +    GW+   D +     +   N+  H +  KN+A+ I    +  I
Sbjct:   40 YDLDANLAVLKLYQFNPAYSQTSVISQILLKALMNLPNADFIMCRCVIDDAIQQDLTIKKVILLAERLETCAFTSAWQFIKEEASLVDGVTGFHDAIRNYITYVIGVTYQTIEESLASELLGGLQGAQLQDWIKAK----GWMSSDDGT-----IYVTNQEAHIK-SKNIAEKIDFASVANI 211          
BLAST of CV712202 vs. ExPASy Swiss-Prot
Match: EIF3K_DICDI (Eukaryotic translation initiation factor 3 subunit K OS=Dictyostelium discoideum GN=eif3k PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.860e-19
Identity = 59/185 (31.89%), Postives = 95/185 (51.35%), Query Frame = -3
Query:  208 TYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKG-LSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFP 759
            TY   AN  LL+LYQF P  ++   +A++L KALM  P  DF    ++IP  +Q E+    L +L+++LET +F+  W     H +    +P F   I++F   VLS+TYQ I  T+L E +NL     L  +++ ++    W +    S S + +   N       K+  AD+   + ++RI P
Sbjct:   71 TYLFQANSTLLKLYQFNPTHLNKDSIAKMLAKALMNFPCNDFLFLSYMIPSIIQKEEPLLKLFILNNFLETCKFKEAWTHINSH-SFFSEIPSFIDNIRNFISGVLSITYQNISITMLGELLNLSDRTQLVDYIQSKQPT--WKI----SDSTVSLQSDNS------KQKKADTFTFDQLSRILP 242          
The following BLAST results are available for this feature:
BLAST of CV712202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
EIF3K_ORYSJ2.156e-8279.14Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ARATH4.496e-8075.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_BOVIN6.598e-2334.25Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_MOUSE8.618e-2334.25Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_HUMAN8.618e-2334.25Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DANRE3.275e-2232.60Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENTR1.625e-2132.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENLA1.625e-2132.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_NEMVE2.772e-2131.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DICDI9.860e-1931.89Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001B01_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712202 ID=CV712202; Name=CV712202; organism=Citrus sinensis; type=EST; length=767bp
TTTTTTTTTTTTGGTAAGAGAAATAAATGCCAATAATAACATTGTGTCTC
ATCAATTCCTCCAAGCCACTTGGGCTATGTTTTCAACATAAACACAAAAA
GAGATTACAGCAGTCCCCAAAATTCACTGCAAGAGTGCTATAGCATCTGG
TTAAAACAAATGAAAATTTACCAAATGCCAGGATTTGAACTTCAATCAAC
CGAGAATGGGAAATATGCGGGTAATGTGTTCTAACGGGATGCTATCAGCA
ACATTCTTCTTCAGCTCGGGATGATTAAATTCATTAGGCGGCAGGACAAT
CAATTGGCTCGTACTTTGATCTCCTTCAAGAATCCAGCCACAATTTGCCT
TCTGGTGTTCAAGGAATTTGTCCAGAGATAGACCTTTAAGATTGATAGCC
TCGGCAAGCACAGTCCTTGGAATCTTTTGATATGTCAATGAAAGGACATG
AATTGCAAAGGACTGAATTGCTTGCTCAAAACCTGGCACGGCTTCAACTA
TGTTACGATGCTTAGCTGCTTCATCCCAGAAATGGCGGAACCTTCCTGTC
TCCAAGTAGTGAGAGAGGACAATCAGCGTCTTGAATTGATCCTCCATTTG
CACTCTTTCTGGGATCAAAAAGAGACAGAGACTGAAATCTGGAGCTGGCA
TTGCCATAAGAGCCTTAATTAAAATGCGGGCAACAATTTGGGTACTCATT
CTTTCTGGTTCAAACTGATAAAGACGAAGAAGGCAAAGATTTGCATCCAG
ACTATATGTTTGTGCCT
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