CV712201

Overview
NameCV712201
Unique NameCV712201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712201_ssr666 microsatellite CV712201_ssr666:666..675. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.130e-39
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = -2
Query:  331 ENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIK 645
            E++LP +DIFVCTADP  E P++VI+TVLSVMAYDY  EKL++YLSDDA    TFY L EAS+FAKHWIP+CKK+ VEPRSP AYF  ++ P +    K +  +K
Sbjct:  108 EDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYFAKVASPPDGCGPKEWFTMK 212          

HSP 2 Score: 46.595 bits (109), Expect = 1.130e-39
Identity = 20/53 (37.74%), Postives = 34/53 (64.15%), Query Frame = -1
Query:   62 FFSV*KLYEDMENGIITAAKLSRIPEEVRSKYKGFSQWDSFFSQRDHDTILQV 220
            +F++ +LY+DM + + +     RIPE  R   +GFSQW+  F+  DH +I+Q+
Sbjct:  208 WFTMKELYKDMTDRVNSVVNSGRIPEVPRCHSRGFSQWNENFTSSDHPSIVQI 260          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.541e-31
Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = -2
Query:  331 RYENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIK 651
            RYE +LPG+DIFVCTADP++E P +VI+T+LSVMAY+YP+EK+SVYLSDD     TFYAL EAS FAK W+P+CK++ +EPRSP AYF      H     K +  IK
Sbjct:   97 RYEQNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYFSESKVHHNLCIPKEWALIK 203          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.647e-30
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = -2
Query:  331 RYENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIK 651
            RY+ +LPG+D+FVCTADP  E P +VI+T+LSVMAY+YP+EK+SVYLSDD     TFYAL EAS FAK W+P+C+++ +EPRSP AYF      H     K +  IK
Sbjct:   92 RYKENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYFSESEGHHNLCSPKEWSFIK 198          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.173e-30
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  382 RYENDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQS 651
            RY +DLP +D+FVCTADP  E P++V+NTVLSV A DYP EKL+VYLSDD   + TFYAL EA++FAK W+P+CKKF VEP SP AY  S
Sbjct:  103 RYGSDLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAYLSS 192          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.797e-27
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = -2
Query:  349 DLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYF--QSISEPHEAEEAK 639
            D P +D+F+CTADP  E P+MV+NT LSVMAY+YP++K+SVY+SDD     TF+ALIEA++F+K W+P+CKK  V+ RSP  YF  +S S   EAE  K
Sbjct:   97 DFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYFSSESHSRSDEAENLK 195          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.458e-27
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = -2
Query:  349 DLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQS--ISEPHEAEEAK 639
            D P +D+F+CTADP  E P+MV+NT LSVMAY+YP++K+SVY+SDD     T +AL+EA++F+KHW+P+CKK  V+ RSP  YF S   S   EAE  K
Sbjct:  116 DFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYFSSKLRSRSDEAENIK 214          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.884e-26
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = -2
Query:  244 DLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFLAIKVQISQNIV*HESRNGNWLLLLTAFGSFRC 639
            D P +D+F+CTADP  E P+MV+NT LSVMAY+YP+ K+SVY+SDD     T +AL+EA++F+KHW+P+CK   V+ RSP  YF S S  H + +    L +  +  ++ V H   +G       A   F C
Sbjct:   94 DFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYFSSKS--HSSSDEAENLKMMYEDMKSRVEHVVESGKVETAFIACDQFSC 223          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.764e-24
Identity = 48/101 (47.52%), Postives = 74/101 (73.27%), Query Frame = -2
Query:  340 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 642
            +DLPG+D+FV TADP+ E P++  NT+LS++A DYP EKLS Y+SDD     TF A+ EA +FA++W+P+C+K  +EPR+P +YF    +P + ++ + F+
Sbjct:  262 SDLPGVDVFVSTADPEKEPPLVTANTLLSILAVDYPIEKLSAYISDDGGAILTFEAMAEAVRFAEYWVPFCRKHDIEPRNPDSYFSIKKDPTKNKKRQDFV 362          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.131e-24
Identity = 49/101 (48.51%), Postives = 71/101 (70.30%), Query Frame = -2
Query:  340 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 642
            +DLPG+DIFV TADP+ E P++  NT+LS++A DYP EKLS Y+SDD     TF A+ EA+ FA  W+P+C+K  +EPR+P +YF    +P++ +    F+
Sbjct:  395 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFV 495          
BLAST of CV712201 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.131e-24
Identity = 49/101 (48.51%), Postives = 71/101 (70.30%), Query Frame = -2
Query:  340 NDLPGMDIFVCTADPKTEQPIMVINTVLSVMAYDYPTEKLSVYLSDDAAHDSTFYALIEASQFAKHWIPYCKKFYVEPRSPGAYFQSISEPHEAEEAKGFL 642
            +DLPG+DIFV TADP+ E P++  NT+LS++A DYP EKLS Y+SDD     TF A+ EA+ FA  W+P+C+K  +EPR+P +YF    +P++ +    F+
Sbjct:  395 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFV 495          
The following BLAST results are available for this feature:
BLAST of CV712201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLE2_ORYSJ1.130e-3960.95Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE1_ORYSJ2.541e-3159.81Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE6_ORYSJ1.647e-3057.01Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ARATH8.173e-3065.56Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLG1_ARATH3.797e-2756.57Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLG3_ARATH8.458e-2755.56Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG2_ARATH1.884e-2643.94Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLD1_ARATH1.764e-2447.52Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD2_ORYSJ5.131e-2448.51Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI5.131e-2448.51Cellulose synthase-like protein D2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712201 ID=CV712201; Name=CV712201; organism=Citrus sinensis; type=EST; length=823bp
CTTCAATTCAGCAAAGCATGATAAGATAACAGCTTTTGTTTCTTTAAATA
TTAATAGGACATACTTGAAGAATGGTGTCGTGGTCACGTTGGGAAAAAAA
TGAATCCCACTGCGAAAATCCTTTATATTTTGACCTTACTTCTTCAGGTA
TTCGGCTTAGCTTGGCTGCGGTTATGATTCCATTTTCCATATCTTCATAT
AATTTCTAGACAGAGAAAAAAAATTGCATGAAGGCTATGTACTACATCTA
AAAGAACCGAAAGCAGTCAAAAGAAGTAACCAGTTCCCATTCCTTGATTC
ATGCTATACTATATTTTGACTTATTTGTACCTTGATGGCTAAAAACCCTT
TAGCCTCCTCTGCCTCATGTGGTTCAGAAATTGACTGAAAATAAGCACCT
GGTGACCTAGGCTCCACATAAAATTTCTTGCAATAGGGGATCCAATGCTT
TGCAAATTGAGATGCCTCTATGAGAGCATAAAATGTACTATCGTGAGCAG
CATCGTCTGAGAGATATACACTAAGCTTCTCTGTAGGATAATCATATGCC
ATGACCGATAAAACAGTGTTGATCACCATGATTGGTTGCTCTGTCTTGGG
GTCTGCTGTGCATACAAAAATATCCATCCCGGGCAAGTCATTCTCATATC
TGCAAATGAAAAAAAATATATATATTTGCTTCCTTGCCATGATAATCAAG
TTTTAAATCTTTTCCATTAACTTGNTAATAAGAATGCACAAATATGTATA
TTTCTGTTGTATGTTTGAGTCTTTAGAAATACAGCTCATCTGTGTCCTTC
TAGCTTTTCTATTTCATTATTAA
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