CV712193

Overview
NameCV712193
Unique NameCV712193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11919 contig Csv1_Contig11919:829..1591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.444e-70
Identity = 132/159 (83.02%), Postives = 142/159 (89.31%), Query Frame = -2
Query:  320 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKA 796
            GFISAMISN+SFTYRS+YSKKAMTDMDSTNIYAYISIIALFVC+PPAIIVEGPQL+KHG +DAI+KVG+ KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+AFGNKISTQ              YS IKA+MEEEKRQMK+
Sbjct:  245 GFISAMISNVSFTYRSLYSKKAMTDMDSTNIYAYISIIALFVCLPPAIIVEGPQLMKHGFNDAIAKVGLTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIAFGNKISTQTAIGTSIAIAGVALYSLIKAKMEEEKRQMKS 403          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.108e-68
Identity = 131/160 (81.88%), Postives = 140/160 (87.50%), Query Frame = -2
Query:  317 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 796
            GFISAMISNISFTYRSI+SKKAMTDMDSTN+YAYISIIALFVC+PPAIIVEGPQL+KHG +DAI+KVGM KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKRQ K A
Sbjct:  248 GFISAMISNISFTYRSIFSKKAMTDMDSTNVYAYISIIALFVCLPPAIIVEGPQLLKHGFNDAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAGVALYSVIKAKIEEEKRQGKTA 407          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.498e-68
Identity = 129/160 (80.62%), Postives = 140/160 (87.50%), Query Frame = -2
Query:  317 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 796
            GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIAL VCIPPA+I+EGP L+K G +DAI+KVG+VKF+SDLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS+IKAQ+EEEKRQ KAA
Sbjct:  243 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIVCIPPALIIEGPTLLKTGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSFIKAQIEEEKRQAKAA 402          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.498e-68
Identity = 127/160 (79.38%), Postives = 140/160 (87.50%), Query Frame = -2
Query:  317 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 796
            GFISAMISNISFTYRSIYSKKAMTDMDSTN+YAYISIIAL  CIPPA++ EGPQL+KHG +DAI+KVGM+KFISDLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKR+MK+A
Sbjct:  248 GFISAMISNISFTYRSIYSKKAMTDMDSTNLYAYISIIALLFCIPPAVLFEGPQLLKHGFNDAIAKVGMIKFISDLFWVGMFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAIYSLIKARIEEEKRRMKSA 407          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.655e-67
Identity = 128/160 (80.00%), Postives = 138/160 (86.25%), Query Frame = -2
Query:  317 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 796
            GFISAMISNISFTYRSIYSKKAMTDMDSTN+YAYISII+L  CIPPAII+EGPQL+KHG SDAI+KVGM KFISDLFWVGMFYHLYNQLA NTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKR +K+A
Sbjct:  249 GFISAMISNISFTYRSIYSKKAMTDMDSTNLYAYISIISLLFCIPPAIILEGPQLLKHGFSDAIAKVGMTKFISDLFWVGMFYHLYNQLAINTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAVYSLIKAKIEEEKRGLKSA 408          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.037e-66
Identity = 124/160 (77.50%), Postives = 138/160 (86.25%), Query Frame = -2
Query:  317 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 796
            GF SAMISNISFTYRSIYSKKAMTDMDSTN+YAYISIIAL  C+PPAI +EGPQL++HG +DAI+KVG+ KF++DLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS+IKA+MEEEKRQ KAA
Sbjct:  255 GFTSAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIFCLPPAIFIEGPQLLQHGFNDAIAKVGLTKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTCIAIAGVAIYSFIKAKMEEEKRQKKAA 414          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.336e-65
Identity = 123/160 (76.88%), Postives = 138/160 (86.25%), Query Frame = -2
Query:  320 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKA 799
            TGFI+AMISNISFTYRSIYSKKAMTDMDSTN+YAYISIIAL VCIPPA+I EGP+L++HG SDAI+KVG+ KF+SDLF VG+FYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YSYIKA++EEEKR+  A
Sbjct:  250 TGFINAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCIPPALIFEGPKLMQHGFSDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVAMYSYIKAKIEEEKRKKSA 409          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.467e-20
Identity = 53/123 (43.09%), Postives = 83/123 (67.48%), Query Frame = -2
Query:  434 GFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAF 796
            GF+ AMISN++F +R+I+SKK M    +   N YA +S+++L +  P AI VEGPQ+   G   A++ VG  +F+  +    +FYHLYNQ++  +L++++PLT +VGN +KR+ VI  SI+ F
Sbjct:  240 GFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWVDGWQTALATVGP-QFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIF 361          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 54/131 (41.22%), Postives = 87/131 (66.41%), Query Frame = -2
Query:  422 TGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV---GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKI 799
            TGF+ AMISN++F +R+I+SKK M    +   N YA +S+++L +  P +I VE PQ+   G  +A+S+VG     + ++WV    +FYHLYNQ++  +L++++PLT ++GN +KR+ VI  SI+ F   I
Sbjct:  239 TGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMMSLVILTPFSIAVEVPQMWAAGWQNAVSQVGP----NFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPI 365          
BLAST of CV712193 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 41/130 (31.54%), Postives = 72/130 (55.38%), Query Frame = -2
Query:  419 GFISAMISNISFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKIS 796
            GF+SAM SN++   R++ SKK M      +D+  +++ I++++LF+  P     EG +     +  A   V + +  +      + +H Y Q++   L RV+P+TH+VGN +KRV VI  S++ F   +S
Sbjct:  245 GFLSAMASNLTNQSRNVLSKKVMVKKDDSLDNITLFSIITLMSLFLMAPVTFFSEGIKFTPSYIQSA--GVNVQQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVS 372          
The following BLAST results are available for this feature:
BLAST of CV712193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TPT_SPIOL3.444e-7083.02Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB1.108e-6881.88Triose phosphate/phosphate translocator, chloropla... [more]
TPT_PEA5.498e-6880.63Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR5.498e-6879.38Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR4.655e-6780.00Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU1.037e-6677.50Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE3.336e-6576.88Triose phosphate/phosphate translocator, chloropla... [more]
GPT1_ARATH1.467e-2043.09Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH1.916e-2041.22Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT2_BRAOB5.588e-1231.54Triose phosphate/phosphate translocator, non-green... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A20_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712193 ID=CV712193; Name=CV712193; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTAAATTTTAATATTCACATATTTCATTAATTCTCACT
TTCTGTAAAACTCTTCAGAGCTGCTAATTGAATTATATATAAGCTTGTTT
TGAGAGACGGAAGCAAGCGATACATTATTATCAGTCAACATGAGCTGATT
GCAAATTAGCAAATTGTTTGTACTCTGAATTAAAGAAAATTTATTGTCAA
AAAATAACCTCACAGCCAAAGAAATACACTCAATTTGTCATTTTGATCTT
TGGGGGAAAAAGTAGCACGACTTTACATCGGGACCTTTCCTCATTCACAT
GCTTCTTTTCTTCTCATGCTGCTTTCATTTGTCGTTTCTCTTCTTCCATT
TGGGCCTTGATGTAAGAGTAGGCTGCCACTCCAGCAATTGCAATGACTGT
TCCAATACCAGTTTGGGTTGAGATCTTGTTGCCAAAGGCCAGGATTGAGA
ACCCAATCACAAACACACGTTTCAGTACATTGCCAACTGCATGAGTAAGA
GGTGCAACCCTCTCCAAGGTGTTGGTAGCCAACTGATTGTAGAGGTGGTA
AAACATCCCCACCCAAAAAAGATCTGAAATGAACTTGACCATGCCCACTT
TGGAAATTGCATCACTTAAGCCATGCTTAATCAGTTGAGGTCCCTCAACA
ATGATGGCTGGTGGAATACAGACAAAGAGCGCAATGATGGAAATATAGGC
ATAAATATTAGTACTGTCCATATCAGTCATGGCTTTCTTGGAGTAGATAC
TCCTGTAAGTAAACGATATGTTGGAAATCATAGCACTAATGAAGCCCGTC
back to top