CV712191

Overview
NameCV712191
Unique NameCV712191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9552 contig Csv1_Contig9552:712..1426. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.492e-91
Identity = 166/223 (74.44%), Postives = 186/223 (83.41%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 669
            LHYTSG  FT             QLGAEHSQRLESYFQS+PG+Q+VACSTP NAKGL+K++IRSENPVILFEHVLLYNLKE IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+QA K+LV KGYDPE+IDI SLKP DL TI  SIKKTH+VLIVEECMRTGGIGASL A I E+  D+LDAPI+CLSSQDVPTPY+G LEE TV+QPAQIV AVEQLC
Sbjct:  101 LHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLKETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKPVDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.449e-90
Identity = 163/224 (72.77%), Postives = 189/224 (84.38%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 672
            LHYTSGG FT             QLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+ILFEHVLLYNLKE + +EEY+  LE+AE+VRPG  +TILTYSRMR++V+QA K+LV KGYDPE+IDI SLKPFDL TIG S+ KTH+VLIVEECMRTGGIGA+L AAI E+F DYLDAPI+CLSSQDVPTPY+  LEE TV+QP QI+  VEQLC+
Sbjct:  101 LHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLCE 324          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.038e-88
Identity = 158/224 (70.54%), Postives = 185/224 (82.59%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 672
            LHYTSGG F              QLGAEHSQRLESYFQS+PG+QMVACSTPYN KGL+K+AIR++NPVI FEHVLLYNL E + ++EY+  LE+AE+VRPG  +TILTYSRMR+HV+QAAK LVNKGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECMRTGGIGASL AAI E+  DYLDAPI CLSSQDVPTPY+G LEE TV+QP QI+ AVE++C+
Sbjct:  101 LHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMCK 324          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.298e-86
Identity = 152/222 (68.47%), Postives = 182/222 (81.98%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            LHYTSGG FT             QLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+I FEHVLLYN+KE IP +EY+  LE+AE+VR G  +TILTYSRMRYHV+QAAKTL+ KGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECM+TGGIG +L +AI E+  D+LD PI+ LSSQDVPTPY G LE+ TV+QP+QIV A E++
Sbjct:  101 LHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDMGTISTSLRKTHKVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPYNGFLEDLTVIQPSQIVEAAEKI 322          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.077e-77
Identity = 140/222 (63.06%), Postives = 175/222 (78.83%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            L YTSGG FT             QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP++EY+  L++AE+VR G+ +TILTYSRMR+HV +A   L+N GYDPEV+D+ SLKP D+ +I  S+KKTHRVLIVEECM+T GIGA L A I E+  D LDAP+V LSSQD+PTPY G+LE+ TV+QP QI+ AV+ +
Sbjct:  101 LRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVKNI 322          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.344e-77
Identity = 139/222 (62.61%), Postives = 173/222 (77.93%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            L YTSGG F              QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPVI FEHVLLYNLK+ +P++EY   L++AE+VR G  VTILTYSRMR+HVMQA   LVN GY+PEVID+ SLKP D+ +I  S+ KTH+++IVEECM+TGGIGA + A I +N+ D+LDAPIV LSSQD+PTPY G LE+ TV+ P QI+ AV+ +
Sbjct:  101 LRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVKSI 322          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.190e-76
Identity = 140/222 (63.06%), Postives = 171/222 (77.03%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            L YTSGG FT             QLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP EEY   L + E VR G+ +TILTYSRMR+HV+QA   L+ +GYDPEVID+ SLKP D+ +I  S+KKTH+VLIVEECM+T GIGA L A I E   D LDAP+V LSSQD+PTPY G+LE+ TV+QP+QIV +V+ +
Sbjct:  101 LRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVKSI 322          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.234e-74
Identity = 138/222 (62.16%), Postives = 168/222 (75.68%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            L  TSGG +              QLGAEHSQRLE YFQS+PG+Q+VACSTPYNAKGL+K+AIRS+NP+   EHVLLYNLK  +PD +Y+  LE+AE+VR G  +TILTYSRMRY+V+QA K LV KGYDPE+ID+ SLKPFD+ TIG SI+KTH+VLIVEE M TGGI   L + I ENF D LD   +CLSS +VPTPY+G LEE ++VQ A I+ +VEQ+
Sbjct:  101 LSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKPFDIETIGKSIQKTHKVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPYSGPLEEVSIVQTADIIESVEQI 322          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.584e-73
Identity = 135/217 (62.21%), Postives = 164/217 (75.58%), Query Frame = 1
Query:   10 TSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVE 660
            TSGG F              QLGAEHSQRLESYFQS+PG+Q+V CSTPYNAKGL+K+AIRS+NP++  EHVLLYNLK  +PD +Y+  LE+AE+VR G  +T+LTYSR RY+V+QA K LV +GYDPEVID+ SLKPFD+ TIG SI+KTH+VLIVEECM TGGI   L + I +NF D LDA  + LSS +VPTPY G LEE TVVQ   I+ ++E
Sbjct:  104 TSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEGYDPEVIDLISLKPFDMETIGKSIQKTHKVLIVEECMMTGGISNVLQSLIIDNFFDALDAAPLILSSPNVPTPYTGPLEEATVVQTIDIIESIE 320          
BLAST of CV712191 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.175e-70
Identity = 132/222 (59.46%), Postives = 166/222 (74.77%), Query Frame = 1
Query:    1 LHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 666
            LHYTSGG ++             QL AEHSQR+E+YFQ++PG+++VACSTPYNAKGL+KAAIR  NPV+  EHVLLYNLK+ IP +EY+  L++A++VR G  VTI+TYSRM +HVMQA K LV +G +PEVID+ SLKP DL T+  S+ KTH+ +IVEECM+TGGI A + A I  +  D LDAPI  LSS+DVPTPY G LE+  +VQP QIV AV+ L
Sbjct:  102 LHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVKTL 323          
The following BLAST results are available for this feature:
BLAST of CV712191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAPU8.492e-9174.44Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.449e-9072.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL1.038e-8870.54Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU6.298e-8668.47Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.077e-7763.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL5.344e-7762.61Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.190e-7663.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI4.234e-7462.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT3.584e-7362.21Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.175e-7059.46Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712191 ID=CV712191; Name=CV712191; organism=Citrus sinensis; type=EST; length=715bp
CTCCACTATACTTCTGGTGGGCAGTTTACCATACCAATAGTTATCCGTGG
ACCTGGTGGAGTTGGCCGACAACTTGGAGCTGAGCATTCCCAACGCCTTG
AGTCATATTTTCAATCAATCCCCGGAATTCAAATGGTGGCATGCTCGACC
CCATACAATGCCAAGGGCTTGATGAAAGCTGCAATCCGAAGTGAGAACCC
AGTTATACTTTTCGAGCATGTGTTGCTTTACAACCTCAAGGAAAGGATTC
CAGATGAGGAATACATTTGTAATCTTGAGGAAGCTGAGATGGTTAGGCCT
GGGGAGCATGTCACTATTTTAACCTATTCTCGAATGAGGTATCATGTGAT
GCAAGCTGCTAAAACTTTGGTAAACAAAGGGTATGATCCTGAGGTTATTG
ACATCAGGTCATTGAAACCATTTGATCTTTATACCATTGGAAATTCAATT
AAAAAGACACATCGTGTACTGATTGTGGAGGAGTGCATGCGGACTGGTGG
AATTGGTGCTAGTTTAACTGCAGCTATCACTGAGAATTTCCATGATTACT
TGGATGCTCCTATTGTATGCTTATCATCACAGGACGTGCCAACTCCATAT
GCCGGCACGTTGGAGGAATGGACTGTGGTTCAACCTGCCCAGATTGTGAC
AGCAGTTGAGCAGCTTTGCCAATAGTTTTTGAATACCGAAGTGTCATAAC
CGAATCTATCTATGC
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