CV712190

Overview
NameCV712190
Unique NameCV712190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712190_ssr78 microsatellite CV712190_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9552 contig Csv1_Contig9552:709..1545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.461e-90
Identity = 167/223 (74.89%), Postives = 187/223 (83.86%), Query Frame = -1
Query:  166 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 834
            LHYTSG  FT            RQLGAEHSQRLESYFQS+PG+Q+VACSTP NAKGL+K++IRSENPVILFEHVLLYNLKE IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+QA K+LV KGYDPE+IDI SLKP DL TI  SIKKTH+VLIVEECMRTGGIGASL A I E+  D+LDAPI+CLSSQDVPTPY+G LEE TV+QPAQIV AVEQLC
Sbjct:  101 LHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLKETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKPVDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.615e-89
Identity = 163/224 (72.77%), Postives = 189/224 (84.38%), Query Frame = -1
Query:  163 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 834
            LHYTSG  FT            RQLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+ILFEHVLLYNLKE + +EEY+  LE+AE+VRPG  +TILTYSRMR++V+QA K+LV KGYDPE+IDI SLKPFDL TIG S+ KTH+VLIVEECMRTGGIGA+L AAI E+F DYLDAPI+CLSSQDVPTPY+  LEE TV+QP QI+  VEQLC+
Sbjct:  101 LHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLCE 324          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.157e-87
Identity = 158/224 (70.54%), Postives = 185/224 (82.59%), Query Frame = -1
Query:  163 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 834
            LHYTSG  F             RQLGAEHSQRLESYFQS+PG+QMVACSTPYN KGL+K+AIR++NPVI FEHVLLYNL E + ++EY+  LE+AE+VRPG  +TILTYSRMR+HV+QAAK LVNKGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECMRTGGIGASL AAI E+  DYLDAPI CLSSQDVPTPY+G LEE TV+QP QI+ AVE++C+
Sbjct:  101 LHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMCK 324          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.022e-85
Identity = 152/222 (68.47%), Postives = 182/222 (81.98%), Query Frame = -1
Query:  169 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 834
            LHYTSG  FT            RQLGAEHSQRLESYFQS+PG+QMVACSTPYNAKGL+K+AIRS+NP+I FEHVLLYN+KE IP +EY+  LE+AE+VR G  +TILTYSRMRYHV+QAAKTL+ KGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECM+TGGIG +L +AI E+  D+LD PI+ LSSQDVPTPY G LE+ TV+QP+QIV A E++
Sbjct:  101 LHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDMGTISTSLRKTHKVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPYNGFLEDLTVIQPSQIVEAAEKI 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.201e-76
Identity = 140/222 (63.06%), Postives = 175/222 (78.83%), Query Frame = -1
Query:  169 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 834
            L YTSG  FT            RQLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP++EY+  L++AE+VR G+ +TILTYSRMR+HV +A   L+N GYDPEV+D+ SLKP D+ +I  S+KKTHRVLIVEECM+T GIGA L A I E+  D LDAP+V LSSQD+PTPY G+LE+ TV+QP QI+ AV+ +
Sbjct:  101 LRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVKNI 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.958e-76
Identity = 139/222 (62.61%), Postives = 173/222 (77.93%), Query Frame = -1
Query:  169 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 834
            L YTSG  F             RQLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPVI FEHVLLYNLK+ +P++EY   L++AE+VR G  VTILTYSRMR+HVMQA   LVN GY+PEVID+ SLKP D+ +I  S+ KTH+++IVEECM+TGGIGA + A I +N+ D+LDAPIV LSSQD+PTPY G LE+ TV+ P QI+ AV+ +
Sbjct:  101 LRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVKSI 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.327e-75
Identity = 140/222 (63.06%), Postives = 171/222 (77.03%), Query Frame = -1
Query:  169 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 834
            L YTSG  FT            RQLGAEHSQRLE+YFQ+IPG+++VACSTPYNAKGL+K+AIR  NPV+ FEHVLLYNL+E IP EEY   L + E VR G+ +TILTYSRMR+HV+QA   L+ +GYDPEVID+ SLKP D+ +I  S+KKTH+VLIVEECM+T GIGA L A I E   D LDAP+V LSSQD+PTPY G+LE+ TV+QP+QIV +V+ +
Sbjct:  101 LRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVKSI 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.721e-73
Identity = 137/222 (61.71%), Postives = 168/222 (75.68%), Query Frame = -1
Query:  169 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 834
            L  TSG  +             +QLGAEHSQRLE YFQS+PG+Q+VACSTPYNAKGL+K+AIRS+NP+   EHVLLYNLK  +PD +Y+  LE+AE+VR G  +TILTYSRMRY+V+QA K LV KGYDPE+ID+ SLKPFD+ TIG SI+KTH+VLIVEE M TGGI   L + I ENF D LD   +CLSS +VPTPY+G LEE ++VQ A I+ +VEQ+
Sbjct:  101 LSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKPFDIETIGKSIQKTHKVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPYSGPLEEVSIVQTADIIESVEQI 322          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 134/217 (61.75%), Postives = 164/217 (75.58%), Query Frame = -1
Query:  175 TSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVE 825
            TSG  F             +QLGAEHSQRLESYFQS+PG+Q+V CSTPYNAKGL+K+AIRS+NP++  EHVLLYNLK  +PD +Y+  LE+AE+VR G  +T+LTYSR RY+V+QA K LV +GYDPEVID+ SLKPFD+ TIG SI+KTH+VLIVEECM TGGI   L + I +NF D LDA  + LSS +VPTPY G LEE TVVQ   I+ ++E
Sbjct:  104 TSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEGYDPEVIDLISLKPFDMETIGKSIQKTHKVLIVEECMMTGGISNVLQSLIIDNFFDALDAAPLILSSPNVPTPYTGPLEEATVVQTIDIIESIE 320          
BLAST of CV712190 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.425e-69
Identity = 131/222 (59.01%), Postives = 166/222 (74.77%), Query Frame = -1
Query:  169 LHYTSGEQFTXXXXXXXXXXXXRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 834
            LHYTSG  ++            +QL AEHSQR+E+YFQ++PG+++VACSTPYNAKGL+KAAIR  NPV+  EHVLLYNLK+ IP +EY+  L++A++VR G  VTI+TYSRM +HVMQA K LV +G +PEVID+ SLKP DL T+  S+ KTH+ +IVEECM+TGGI A + A I  +  D LDAPI  LSS+DVPTPY G LE+  +VQP QIV AV+ L
Sbjct:  102 LHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVKTL 323          
The following BLAST results are available for this feature:
BLAST of CV712190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAPU1.461e-9074.89Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.615e-8972.77Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL1.157e-8770.54Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU7.022e-8568.47Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.201e-7663.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL5.958e-7662.61Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.327e-7563.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI4.721e-7361.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT3.996e-7261.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.425e-6959.01Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712190 ID=CV712190; Name=CV712190; organism=Citrus sinensis; type=EST; length=837bp
CCCCTTTTTTTTTAGAACAACTTGATGATTTCATGAATAGTTGCACGTTT
TTATCGCACAAAATTGCTAACAATCTTAATAAATAAATATTCAAAGCAAA
GCTGCTGAGAACTAACACTGCATAGATAGATTCGGTTATGACACTTCGGT
ATTCAAAAACTATTGGCAAAGCTGCTCAACTGCTGTCACAATCTGGGCAG
GTTGAACCACAGTCCATTCCTCCAACGTGCCGGCATATGGAGTTGGCACG
TCCTGTGATGATAAGCATACAATAGGAGCATCCAAGTAATCATGGAAATT
CTCAGTGATAGCTGCAGTTAAACTAGCACCAATTCCACCAGTCCGCATGC
ACTCCTCCACAATCAGTACACGATGTGTCTTTTTAATTGAATTTCCAATG
GTATAAAGATCAAATGGTTTCAATGACCTGATGTCAATAACCTCAGGATC
ATACCCTTTGTTTACCAAAGTTTTAGCAGCTTGCATCACATGATACCTCA
TTCGAGAATAGGTTAAAATAGTGACATGCTCCCCAGGCCTAACCATCTCA
GCTTCCTCAAGATTACAAATGTATTCCTCATCTGGAATCCTTTCCTTGAG
GTTGTAAAGCAACACATGCTCGAAAAGTATAACTGGGTTCTCACTTCGGA
TTGCAGCTTTCATCAAGCCCTTGGCATTGTATGGGGTCGAGCATGCCACC
ATTTGAATTCCGGGGATTGATTGAAAATATGACTCAAGGCGTTGGGAATG
CTCAGCTCCAAGTTGTCGGCCAACTCCACCAGGTCCACGGATAACTATTG
GTATGGTAAACTGCTCACCAGAAGTATAGTGGAGCCT
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