CN192504

Overview
NameCN192504
Unique NameCN192504
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN192504_ssr167 microsatellite CN192504_ssr167:167..184. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5977 contig Csv1_Contig5977:2..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSJ (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.293e-46
Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:  220 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            V +FD+EEDLAVSLAKYTA+LSAK   E+G+FTVVLSGGSLI ++RKL EPPY+DS++W+KWHVFWVD RVVPKDH+DSNYKLA DGFLSKVPI TG VYAINDALSAE
Sbjct:   75 VLIFDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALSAE 183
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL4_ORYSI (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 1.293e-46
Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:  220 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            V +FD+EEDLAVSLAKYTA+LSAK   E+G+FTVVLSGGSLI ++RKL EPPY+DS++W+KWHVFWVD RVVPKDH+DSNYKLA DGFLSKVPI TG VYAINDALSAE
Sbjct:   75 VLIFDAEEDLAVSLAKYTAELSAKLAAERGAFTVVLSGGSLIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALSAE 183
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL5_ARATH (Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 7.844e-44
Identity = 83/109 (76.15%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:  220 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            V+++D EE+L + LAK+TADLS KF KE+G+FTVV+SGGSLI SLRKLVE PYVDSI+WA+WH FWVD RVVPK+HDDSNYKLAYD FLSKVPI  G+VYAIN+ALSAE
Sbjct:   83 VEIYDLEENLVIDLAKFTADLSDKFCKERGAFTVVVSGGSLIKSLRKLVESPYVDSIDWARWHFFWVDERVVPKNHDDSNYKLAYDSFLSKVPIPPGNVYAINEALSAE 191
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSJ (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0547100 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.924e-38
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:  226 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            +FD+EE LA SLAKYTA LS +   E+G+FTV LSGGSLI +LRKL E PY++++EW+KWHVFWVD RVVPKDH DSNYKLA DG LSKVPI    +YAIND LSAE
Sbjct:   80 IFDAEEYLAESLAKYTARLSGEAVAERGAFTVALSGGSLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAINDTLSAE 186
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL3_ORYSI (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_30141 PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 4.924e-38
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:  226 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            +FD+EE LA SLAKYTA LS +   E+G+FTV LSGGSLI +LRKL E PY++++EW+KWHVFWVD RVVPKDH DSNYKLA DG LSKVPI    +YAIND LSAE
Sbjct:   80 IFDAEEYLAESLAKYTARLSGEAVAERGAFTVALSGGSLIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAINDTLSAE 186
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL2_ARATH (Probable 6-phosphogluconolactonase 2 OS=Arabidopsis thaliana GN=At3g49360 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.213e-36
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  223 QVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            +VF +  ++AV LAKYTADLS+KF KE+G FTVVLSGG LI  L KL+E PY+DSIEW+KWH+FWVD RV   DH DSNYKLAYDGFLSKVP+   ++YAI++ L AE
Sbjct:    7 RVFKTNNEMAVELAKYTADLSSKFCKERGVFTVVLSGGDLIAWLWKLLEAPYIDSIEWSKWHIFWVDERVCAWDHADSNYKLAYDGFLSKVPVPAENIYAIDNGLGAE 114
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL4_ARATH (Probable 6-phosphogluconolactonase 4 OS=Arabidopsis thaliana GN=At5g24410 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.255e-33
Identity = 66/106 (62.26%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:  226 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSA 543
            VF ++++L+ ++A YTA+LSAKF KE+G FTVVLSGG LI  L +L+EP Y +SIEW+KWH+FWVD RVVP DH+DSNYKLA+DGFLSKVPI   ++Y I+   +A
Sbjct:   14 VFPTKKELSEAMATYTANLSAKFCKERGYFTVVLSGGDLISWLSELLEPKYQESIEWSKWHIFWVDERVVPLDHEDSNYKLAFDGFLSKVPIPIANIYPIDKDCAA 119
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL3_ARATH (Probable 6-phosphogluconolactonase 3 OS=Arabidopsis thaliana GN=At5g24420 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.639e-33
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:  226 VFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            VF ++ +L+ ++A+YTA+LSAKF KEKG FTVVLSGG LID L KLV+PPY+DSIEW KWHVFWVD RV   +  DSNYKLA +GFLSKVPI   ++YAI+  L+A+
Sbjct:    8 VFPTKNELSEAMAEYTANLSAKFIKEKGLFTVVLSGGDLIDWLCKLVQPPYIDSIEWPKWHVFWVDERVCAWEDPDSNYKLAMEGFLSKVPIPDKNIYAIDKHLAAD 114
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL1_ARATH (Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.588e-28
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:  220 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            ++V ++ E+L++ L  Y A++S    KE G+F +VLSGGSLI  + KL+EPPY   ++WAKW+VFW D RVV K+HDDSNYKLA D  LSKV +   H+ +IND +SAE
Sbjct:   13 IRVHENLEELSIDLVDYIAEISEASIKEHGAFCIVLSGGSLISFMGKLIEPPYDKIVDWAKWYVFWADERVVAKNHDDSNYKLAKDNLLSKVNVFPRHICSINDTVSAE 121
[Close]
BLAST of CN192504 vs. ExPASy Swiss-Prot
Match: 6PGL2_ORYSJ (Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.941e-26
Identity = 50/109 (45.87%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:  220 VQVFDSEEDLAVSLAKYTADLSAKFGKEKGSFTVVLSGGSLIDSLRKLVEPPYVDSIEWAKWHVFWVDXRVVPKDHDDSNYKLAYDGFLSKVPITTGHVYAINDALSAE 546
            +++F+S ++++  LA+Y + +S    KE+G F + LSGG L+  L KL E PY  +++W+KW++FW D R V K+H +SNY++  +GFLSKVPI  GHVY+IND  + E
Sbjct:   17 IRIFESSDEMSTDLAEYISQVSEISVKERGYFAIALSGGPLVSFLGKLCEAPYNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVE 125
The following BLAST results are available for this feature:
BLAST of CN192504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
6PGL4_ORYSJ1.293e-4679.82Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL4_ORYSI1.293e-4679.82Probable 6-phosphogluconolactonase 4, chloroplasti... [more]
6PGL5_ARATH7.844e-4476.15Probable 6-phosphogluconolactonase 5, chloroplasti... [more]
6PGL3_ORYSJ4.924e-3870.09Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
6PGL3_ORYSI4.924e-3870.09Probable 6-phosphogluconolactonase 3, chloroplasti... [more]
6PGL2_ARATH1.213e-3666.67Probable 6-phosphogluconolactonase 2 OS=Arabidopsi... [more]
6PGL4_ARATH1.255e-3362.26Probable 6-phosphogluconolactonase 4 OS=Arabidopsi... [more]
6PGL3_ARATH1.639e-3364.49Probable 6-phosphogluconolactonase 3 OS=Arabidopsi... [more]
6PGL1_ARATH1.588e-2853.21Probable 6-phosphogluconolactonase 1 OS=Arabidopsi... [more]
6PGL2_ORYSJ1.941e-2645.87Probable 6-phosphogluconolactonase 2 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192504 ID=CN192504; Name=CN192504; organism=Citrus sinensis; type=EST; length=546bp
GAGGCTTCACTCGTCTCTTTCTCCACTTGCTTTCTTCCAAAATCACTTTA
TTCCAAAACCCACTTTCAGTTTCAGTCTCAGTTACTCAGAAGACCAAACT
CATTCCTCCAATTTCGAAACATTTCCCTTAATCGGAACAAATCATCGGAC
TGCGTGAGAATCAAGGCATCATCATCATCATCATCAATGGCTGCCGAGAA
TAAGAACAAGAACAAGAACGTACAGGTTTTTGACTCAGAGGAAGATCTGG
CTGTGTCTTTGGCCAAATACACCGCCGATCTATCTGCCAAGTTCGGTAAA
GAGAAGGGCTCCTTCACTGTCGTCTTATCCGGTGGTTCTCTCATCGACTC
CCTCAGGAAATTAGTGGAACCCCCGTATGTAGATTCAATTGAATGGGCGA
AATGGCATGTGTTTTGGGTTGATGNAAGAGTTGTTCCCAAGGATCATGAT
GATAGCAATTATAAGCTTGCTTATGATGGTTTCCTTTCTAAGGTACCAAT
TACCACTGGGCATGTCTATGCCATCAATGATGCATTATCTGCTGAA
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