CN192503

Overview
NameCN192503
Unique NameCN192503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN192503 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = -3
Query:  412 TKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 729
            ++ G     +LK + R  ++  FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AVI GK ++++I    V   GG+LFI FG+  F
Sbjct:  177 SRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282          
BLAST of CN192503 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  403 FFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 666
            F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  231 FISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CN192503 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  403 FFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 666
            F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  231 FISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of CN192503 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = -3
Query:  403 FFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 666
            F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  232 FISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320          
BLAST of CN192503 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = -3
Query:  400 IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 654
            I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV+GGK +A +ISEK V L GG+LF +F + S+ + +
Sbjct:  121 IVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWWTKI 205          
BLAST of CN192503 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 35/88 (39.77%), Postives = 59/88 (67.05%), Query Frame = -3
Query:  421 RPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGI 684
            R   S  FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AV+GGK LA++IS + + L+  +LF +F +
Sbjct:  182 RELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLASSLLFFIFAL 269          
BLAST of CN192503 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  421 SQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGI 672
            S+ FS  F+KAF++ F  E GD+SQ+ATI ++A E    V +G  IG  LCT  AVI G+ ++++I    V   GG++F++FGI
Sbjct:  172 SKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKIEMYKVLFFGGIVFMIFGI 255          
The following BLAST results are available for this feature:
BLAST of CN192503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YD68_SCHPO2.819e-2144.34UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
TM165_RAT1.071e-2051.69Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE1.071e-2051.69Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN1.071e-2051.69Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
Y615_SYNY34.213e-1747.06UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST3.338e-1439.77UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
YLY5_SCHPO3.124e-1244.05UPF0016 membrane protein C186.05c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0006P23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0006P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN192503 ID=CN192503; Name=CN192503; organism=Citrus sinensis; type=EST; length=779bp
CTTAGAGTATCTCACATCTGACTAAGAACCAGACCAAACAATACTGGGAG
AAGATGATACAGAGCAATACAAGATGGGAAAAGCAGACTGCCAAGACAGA
AATTTAGCTTATGGCATGCCTCAAATATCTCATTTGAGATGGATTAAACA
ATAACTTATTTCAATGGAGAACAACAATGAGTGCAGAGGCCAAAAAATAA
TAATCAACTATTCAGTATGGTATAACCTATTGAATATTTTTAGTGACTTA
AACCAGTTTGCTTCTAGGCCATGCTTTCGTAATAATCATAATCACTGACT
TGGCTAATGATAGAGCTTTGAAAGTATCAGTGAAAAATATTCTTCAATTC
ACCGAATCAGCTTTCAATCCCACTAACATCATTGTGGGGATTATGACTTA
ACCGGCGAAAGGAAGGATTGAATTCCAAAAACAATGAAGAGAACTCCACC
CGAGAGTGCGACTATTTTCTCAGATATCTGAGACGCCAAGCTCTTTCCTC
CAATGACAGCAGCAGTCGTACACAATGCTTGTCCTATAATTCCGCCAAGA
ACAACGCCAAATGGGTTCTCATCGGCAGCTAAACCAATGGTAGCTAACTG
GCTCTTGTCACCCCATTCACCAAAGAAAGTAATTGAAAATGCCTTCAAAA
AGATGGGAGAGAAGAACTGTGAGAGGAATGGCCGCCTTTGCTTTTTTAAT
TCATCATCAGCCTTGCTGCCCTCTTTGGTTGCTCCTGCATTTGCTTTAAA
AGTCAGCATCCAGCTTTTTTTCAACTTCT
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