CX302384

Overview
NameCX302384
Unique NameCX302384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302384 vs. ExPASy Swiss-Prot
Match: KICH_SCHPO (Putative choline kinase OS=Schizosaccharomyces pombe GN=SPAC13G7.12c PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  195 LQVIPLKGAMTNEVYQIAWPAKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL----LWDRLRRWVSVAKS 581
            L +  + GA+TN VY +A P   +     +L+RIYG  VE+F NR  E+   + ++    GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++ E H+  +  P + L     W     W+  AK+
Sbjct:   63 LHIKRISGALTNAVYYVAPPEGYHA--PKLLLRIYGPHVELFINRQVELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKAKA 193          
BLAST of CX302384 vs. ExPASy Swiss-Prot
Match: CHKB_MOUSE (Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 48/173 (27.75%), Postives = 91/173 (52.60%), Query Frame = 3
Query:  189 DALQVIPLKGAMTNEVYQIAWP---AKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRRWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFC 689
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++   L+  + R++   +     S        +Y+LKDE++ L K L +    + FC
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNSLRKLLDDTPSPVVFC 239          
BLAST of CX302384 vs. ExPASy Swiss-Prot
Match: CHKB_HUMAN (Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 47/173 (27.17%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  189 DALQVIPLKGAMTNEVYQIAWPAKNNGL---VRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRRWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFC 689
            + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++   L+  + R++   +        +     +Y+LKDE+  L K L +    + FC
Sbjct:   67 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFC 239          
BLAST of CX302384 vs. ExPASy Swiss-Prot
Match: CHKB_RAT (Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  189 DALQVIPLKGAMTNEVYQIAWP---AKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRRWVSVAKSF--CSAKDAKEFCLYTLKDEISMLEKELPNDHQEIGFC 689
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++   L+  + R++   +     S        +Y+LKDE++ L   L      + FC
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHLRTLLDATPSPVVFC 239          
BLAST of CX302384 vs. ExPASy Swiss-Prot
Match: KICH_YEAST (Choline kinase OS=Saccharomyces cerevisiae GN=CKI1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 42/148 (28.38%), Postives = 81/148 (54.73%), Query Frame = 3
Query:  138 KVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLVRNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFI-HARTLSAADIRDPKISELVAAKMREFHD----LKMPGPRKALLWDRLRRWV 566
            K +Q VA D          + ++ + GAMTN ++++ +P      + ++L+RIYG  ++   +R+ E++    +S +  GP L G F +GR E+F+ +++TL+  DIR+ K S+ +A +M+E H     L       +  W ++ +W+
Sbjct:  139 KKIQPVAQD----------MNLVKISGAMTNAIFKVEYPK-----LPSLLLRIYGPNIDNIIDREYELQILARLSLKNIGPSLYGCFVNGRFEQFLENSKTLTKDDIRNWKNSQRIARRMKELHVGVPLLSSERKNGSACWQKINQWL 271          
The following BLAST results are available for this feature:
BLAST of CX302384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KICH_SCHPO5.464e-1533.83Putative choline kinase OS=Schizosaccharomyces pom... [more]
CHKB_MOUSE7.890e-1427.75Choline/ethanolamine kinase OS=Mus musculus GN=Chk... [more]
CHKB_HUMAN2.296e-1327.17Choline/ethanolamine kinase OS=Homo sapiens GN=CHK... [more]
CHKB_RAT3.916e-1327.75Choline/ethanolamine kinase OS=Rattus norvegicus G... [more]
KICH_YEAST7.385e-1228.38Choline kinase OS=Saccharomyces cerevisiae GN=CKI1... [more]
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Properties
Property NameValue
Genbank descriptionC08020B09SK PhyRootSw1 Citrus sinensis cDNA clone C08020B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302384 ID=CX302384; Name=CX302384; organism=Citrus sinensis; type=EST; length=690bp
GACAACTCAGTTTTTCTCTTCCTCTTAGGTGAAGTTTTCAATTTTTGTTG
CAATCACCACTTTGTGCTGAGCTGACTACAAGAATGGCTATAAAGACAAC
TGAATTGTTACCAAGTTCTTCTCCAGAAGAATTAAAGAAAGTTCTTCAAT
CAGTTGCTTCCGACTGGGGAGATGTTATCGATGATTCGGATGCATTGCAG
GTGATTCCATTAAAAGGTGCAATGACTAATGAGGTTTACCAAATAGCGTG
GCCTGCAAAAAATAATGGTCTTGTTAGAAACGTTTTGGTCCGGATTTATG
GAGAAGGCGTCGAGGTTTTCTTCAATAGGGATGATGAAATTAGAACCTTT
GAGTGCATGTCAAGCCAAGGCCAGGGGCCCAGGCTTCTCGGGCGGTTCGG
TGATGGAAGAGTTGAGGAGTTCATTCATGCCAGGACACTGTCGGCTGCTG
ACATCCGTGACCCCAAAATCTCTGAGTTGGTAGCGGCAAAGATGAGAGAA
TTTCATGATCTCAAAATGCCTGGTCCAAGGAAAGCACTACTATGGGACAG
ACTGAGGAGATGGGTTAGTGTGGCCAAAAGTTTCTGTTCTGCTAAAGATG
CAAAGGAATTCTGCTTGTATACTCTGAAGGATGAAATCAGTATGCTGGAG
AAAGAGTTGCCAAATGACCATCAAGAGATTGGCTTTTGTC
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