CX302383

Overview
NameCX302383
Unique NameCX302383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 119.783 bits (299), Expect = 8.262e-27
Identity = 58/130 (44.62%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLIAEKL 411
            M F RFVEVGRV  +++GP  GKL  IVD++D  R L+DGP   T V RQ +  K + LT  +       A QK +++AW+  ++  KW  T WAKK+EAR+++A ++DFDRFK++ AKK R+++I  ++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP--CTQVRRQAMPFKCMQLTDFILK-FPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEV 127          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.409e-26
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLI 399
            M F RFVEVGRV  +++GP  GKL  IVD++D  R L+DGP   T V RQ +  K + LT  +       A QK +++AW+  ++  KW  T WAKK+EAR+K+A ++DFDR+K++ A+K R++LI
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP--CTQVRRQAMPFKCMQLTDFILK-FPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLI 123          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.409e-26
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLI 399
            M F RFVEVGRV  +++GP  GKL  IVD++D  R L+DGP   T V RQ +  K + LT  +       A QK +++AW+  ++  KW  T WAKK+EAR+K+A ++DFDR+K++ A+K R++LI
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGP--CTQVRRQAMPFKCMQLTDFILK-FPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLI 123          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.841e-26
Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLI 399
            M F RFVEVGRV  I++GP  GKL  IVD++D  R L+DGP   T V RQ +  K + LT  +       A QK +++AW+  ++  KW  T WAKK++AR+++A ++DFDRFK++ AKK R+++I
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGP--CTRVRRQAMPFKCMQLTDFILK-FPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRII 123          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 4.101e-26
Identity = 57/126 (45.24%), Postives = 84/126 (66.67%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLI 399
            M F R+VEVGRV  I++GP  GKL  IVD++D  R L+DGP   T V RQ +  K + LT  +       A QK +++AW+  ++  KW  T WAKK++AR+++A ++DFDRFK++ AKK R+++I
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGP--CTRVRRQAMPFKCMQLTDFILK-FPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRII 123          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.921e-25
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 1
Query:   28 FTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLI 399
            F R+VEVGRVVL+  G   GKLA IVDIVD KR LID P   +   RQVI    + LT IV   L RGA    + + WK+Q+V  KW  +AWAKKLEA+K R+ L+DFDRF ++  KKQR + +
Sbjct:    4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSP--CSEFPRQVIRYGSVVLTHIVMK-LPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQV 124          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.010e-24
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLIAEKLS 414
            M FTRFVE GRV L++YG    KL  IVDI+D  R+L+D P    G+ R+VI+ KRI LTSI    + RGA    +K  + +  V + +  + W KKL  R+KRA L DF RFK++VA+ ++SK I  +L+
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSH--GLKRKVINVKRIALTSIKVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELA 129          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.319e-24
Identity = 56/131 (42.75%), Postives = 89/131 (67.94%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLIAEKLS 414
            M F R+VE+GRV L+NYG + GKL  IVD+VD  R L+D P     + R  ++ KR+ LT IV   + R   +K+L EA +  +V  KW +++W +KL  +K+RANL+DFDRFK+++AK +++ ++ ++L+
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPD----MERIQMNFKRLSLTDIVID-INRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELA 126          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.838e-24
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLIAEKLS 414
            M F RFVE+GRV L+NYG + GKL  IVD+VD  R L+D P     + R  ++ KR+ LT IV   + R   +K L EA +  +V  KW +++W +KL  +K+RA L+DFDRFK+++AK +R+ ++ ++L+
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPD----MERIQMNLKRLSLTDIVID-INRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELA 126          
BLAST of CX302383 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.013e-24
Identity = 57/126 (45.24%), Postives = 83/126 (65.87%), Query Frame = 1
Query:   22 MPFTRFVEVGRVVLINYGPEQGKLATIVDIVDGKRVLIDGPQEITGVHRQVISTKRIHLTSIVAGGLERGATQKSLKEAWKSQNVLQKWNETAWAKKLEARKKRANLSDFDRFKLLVAKKQRSKLI 399
            M F RFVE+GRV    YGP+QGKL  IVD++D  R L+DGP   T V R+ ++ K + LT++ A      A    +K+AW+   + +KW E+  AKK+ A++KR  L+DF+RFKL+ AK+ R++LI
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGP--CTHVARKSMNFKELELTNLKA-KFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLI 123          
The following BLAST results are available for this feature:
BLAST of CX302383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RL14_HUMAN8.262e-2744.6260S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_PIG1.409e-2646.0360S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_BOVIN1.409e-2646.0360S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]
RL14_RAT1.841e-2646.0360S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_MOUSE4.101e-2645.2460S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_SCHPO5.921e-2552.4260S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14_GRIJA1.010e-2445.8060S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL142_ARATH1.319e-2442.7560S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL141_ARATH3.838e-2443.5160S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_LUMRU5.013e-2445.2460S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]

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Properties
Property NameValue
Genbank descriptionC08020B08SK PhyRootSw1 Citrus sinensis cDNA clone C08020B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302383 ID=CX302383; Name=CX302383; organism=Citrus sinensis; type=EST; length=531bp
CGAATTCGGCACGAGGGAACAATGCCATTCACAAGATTTGTGGAAGTAGG
AAGAGTTGTTTTAATCAACTATGGACCAGAACAAGGCAAATTAGCCACCA
TTGTTGATATCGTTGATGGCAAGCGAGTGTTGATTGACGGACCTCAAGAA
ATCACTGGTGTCCACCGCCAAGTGATCTCTACCAAGAGAATTCACTTAAC
TTCCATCGTCGCTGGTGGACTTGAACGTGGAGCTACTCAGAAATCACTTA
AGGAGGCATGGAAGTCGCAGAACGTCTTGCAGAAGTGGAACGAGACCGCC
TGGGCTAAGAAGTTAGAGGCCCGAAAAAAGAGAGCCAATCTTTCAGATTT
CGACAGATTCAAACTTTTAGTCGCCAAGAAACAACGATCAAAGTTGATTG
CGGAGAAATTGTCTCATTAACTTTACAATCCATAAATTAATCAAGGATAG
CTCTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAACCCTCGAGGGGGGGCCCGGT
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