CX302381

Overview
NameCX302381
Unique NameCX302381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302381 vs. ExPASy Swiss-Prot
Match: IFT88_MOUSE (Intraflagellar transport protein 88 homolog OS=Mus musculus GN=Ift88 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 76/216 (35.19%), Postives = 132/216 (61.11%), Query Frame = 3
Query:   45 IQTAFNLLLCLYARGDKDKLKKHFMKMLNIPIPGMTEEDEEKAMEHAHHAFGGSGSLKDALGGSNAGLDAVLNEKEDLLRNELHQRLETSNERVLTAARLIAPIIDEKNDWILGYRWVIDQLR-SDYEHVLSKFEIDLSMMYMKKRQFDEAITILKNFEKKDVSLRAIAGTNLSFIYFLEGDYAQAEKNADVAIKSDRYNAKALVNKGNCLFIAGE 689
            ++  FNL+L  +A GD++K+KK F K++ +P+  + E+D+  +     H              +N  ++A+   K D LR    +R   + + ++TAA+LIAP+I+    + +GY W ++ ++ S Y  + +  EI+ ++ Y++++ F++A+  LK FEKKD  +++ A TNLSF+Y+LE ++AQA   AD+A+ SDRYN  AL NKGN +F  G+
Sbjct:  304 LKAGFNLILSCFAIGDREKMKKAFQKLIAVPLE-IDEDDKYISPSDDPH--------------TNLLIEAI---KNDHLRQMERERKAMAEKYIMTAAKLIAPVIEAS--FAVGYNWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVNSDRYNPSALTNKGNTVFANGD 499          
BLAST of CX302381 vs. ExPASy Swiss-Prot
Match: IFT88_HUMAN (Intraflagellar transport protein 88 homolog OS=Homo sapiens GN=IFT88 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 72/217 (33.18%), Postives = 129/217 (59.45%), Query Frame = 3
Query:   42 DIQTAFNLLLCLYARGDKDKLKKHFMKMLNIPIPGMTEEDEEKAMEHAHHAFGGSGSLKDALGGSNAGLDAVLNEKEDLLRNELHQRLETSNERVLTAARLIAPIIDEKNDWILGYRWVIDQLR-SDYEHVLSKFEIDLSMMYMKKRQFDEAITILKNFEKKDVSLRAIAGTNLSFIYFLEGDYAQAEKNADVAIKSDRYNAKALVNKGNCLFIAGE 689
            +++  +NL +C +A GD++K+KK F K++ +P+    E DE+K +  +                +N   +A+   K D LR    +R   + + ++T+A+LIAP+I+    +  GY W ++ ++ S Y  + +  EI+ ++ Y++++ +++A+ ILK  EKKD  +++ A TNLS +Y++  D+AQA   AD+A+ SDRYN  AL NKGN +F  G+
Sbjct:  313 NLKAGYNLTICYFAIGDREKMKKAFQKLITVPL----EIDEDKYISPSDDPH------------TNLVTEAI---KNDHLRQMERERKAMAEKYIMTSAKLIAPVIE--TSFAAGYDWCVEVVKASQYVELANDLEINKAVTYLRQKDYNQAVEILKVLEKKDSRVKSAAATNLSALYYMGKDFAQASSYADIAVNSDRYNPAALTNKGNTVFANGD 508          
The following BLAST results are available for this feature:
BLAST of CX302381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IFT88_MOUSE4.526e-3335.19Intraflagellar transport protein 88 homolog OS=Mus... [more]
IFT88_HUMAN7.226e-3133.18Intraflagellar transport protein 88 homolog OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionC08020B06SK PhyRootSw1 Citrus sinensis cDNA clone C08020B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302381 ID=CX302381; Name=CX302381; organism=Citrus sinensis; type=EST; length=696bp
GAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCTGATATTCAA
ACTGCTTTTAATTTATTGCTCTGTTTATATGCACGTGGTGATAAAGATAA
ATTGAAAAAACATTTCATGAAGATGTTAAACATTCCTATCCCAGGTATGA
CAGAAGAAGATGAAGAAAAAGCCATGGAACATGCTCATCATGCTTTTGGT
GGCTCAGGAAGTTTAAAAGATGCCTTAGGAGGAAGTAATGCTGGTCTTGA
TGCGGTATTAAATGAGAAAGAAGATTTATTACGTAATGAACTTCATCAAC
GTCTTGAAACCTCTAATGAACGTGTATTAACTGCTGCACGTTTAATTGCA
CCAATTATTGATGAGAAAAATGATTGGATTCTCGGTTATCGTTGGGTTAT
TGATCAATTACGATCAGATTATGAACATGTTTTATCAAAATTTGAAATTG
ATTTATCAATGATGTATATGAAAAAACGTCAATTTGATGAAGCAATTACA
ATTTTGAAAAACTTTGAAAAGAAAGATGTATCTTTACGTGCAATTGCTGG
TACCAATTTATCCTTTATTTATTTCTTAGAAGGTGATTATGCCCAAGCAG
AGAAGAATGCTGATGTTGCCATCAAATCAGATCGTTATAATGCTAAAGCA
TTAGTAAATAAAGGTAATTGTTTATTTATTGCTGGAGAATTAGGAC
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