EY680602

Overview
NameEY680602
Unique NameEY680602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.660e-53
Identity = 129/240 (53.75%), Postives = 156/240 (65.00%), Query Frame = 3
Query:   66 MQGVVLNPS-YSR-PHQTLDPPSCSRPASKSTKSFFGERVS--LTRWRNPVCHSSCRLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEEI*RRYLRKSGPILLGQQVDHLDL*QLMNQYLKVEINGSGSWNHDWSGGV------VTQNLGEKIPPIGAI 755
            MQ + LNP+  SR P Q +DP S S       +    +R    + R  NP+     R L  R+    R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE++ DEETGLELNEE   + L +  P L+G     LDL ++ +  +K+ I G        + GV      VTQ L EKIP I A+
Sbjct:    1 MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQL-FRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGP-------AAGVMTVRVAVTQKLREKIPSIAAV 232          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.772e-39
Identity = 102/219 (46.58%), Postives = 132/219 (60.27%), Query Frame = 3
Query:  108 QTLDPPSCSRPA---SKSTKSFFGERVSLTRWRNPVCHSSCRLLLIRKRGAARRN-VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEEI*RRYLRKSGPILLGQQVDHLDL*QLMNQYLKVEINGSGSWNHDWSGGVVTQNLGEKIPPI 746
            QT   P  +  A   S +T S    +V+   W +    SS    L+      R   V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIERRLMEKIP++ AVE V D+ETGLELNEE   + L +  P L G     L    +    +KV + G  +         V++ L EKIP I
Sbjct:    2 QTTTVPMAAAAAVAPSTTTSSSASFKVAAYAWSSCRSSSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRT-VRIAVSKKLREKIPSI 219          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.567e-34
Identity = 84/158 (53.16%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  303 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET-GLELNEEI*RRYLRKSGPILLGQQVDHLDL*QLMNQYLKVEINGSGSWNHDWSGGV------VTQNLGEKIPPIGAI 755
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE RL +KIPEI++VE   + ET GLELN+E   + L +  P L G     L+L ++    +KV + G        + GV      +TQ L E IP IGA+
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGP-------AAGVMTVRVALTQKLRETIPSIGAV 232          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  318 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 527
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER L+E++P +V VE V
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEEVPGVVEVEQV 110          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  291 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVA-VESVADEE 539
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIER L EK  + +  +  V DEE
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEE 162          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 3
Query:  324 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 527
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE RL ++I   + VE+V
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSLVVEAV 112          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  270 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 527
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  270 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 527
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  312 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 536
            T   I+ +LD  IRP +  DGG++     D  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  179 TVMMIKELLDTRIRPTVQEDGGDIVFMSYDNGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 254          
BLAST of EY680602 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  312 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE 536
            T   I+ +LD  IRP +  DGG++     +G VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDE 253          
The following BLAST results are available for this feature:
BLAST of EY680602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NIFU2_ARATH1.660e-5353.75NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ6.772e-3946.58NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH8.567e-3453.16NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
YUTI_BACSU1.243e-1652.86Putative nitrogen fixation protein yutI OS=Bacillu... [more]
NIFU1_ARATH2.769e-1653.57NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU_ANASL8.907e-1555.07Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
NIFU_ANASP1.519e-1447.25Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ1.519e-1447.25Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NFU1_DROWI4.137e-1246.05NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROME4.137e-1246.05NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-012-H03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680602 ID=EY680602; Name=EY680602; organism=Citrus sinensis; type=EST; length=787bp
AAATCGAATCCCCTGAAAGAAAAAAAAAAAAAAAAGTATACACCCGAAGA
AATACAAAGAGAAAGATGCAAGGCGTTGTGTTGAACCCATCTTACAGTCG
CCCTCACCAAACCCTAGACCCTCCTTCTTGTTCGCGTCCTGCCTCTAAGA
GTACTAAAAGTTTCTTTGGAGAACGAGTTTCGCTTACGAGGTGGCGGAAT
CCGGTGTGTCACAGCTCGTGTCGGTTACTGCTGATTCGGAAGCGTGGGGC
CGCGCGAAGGAACGTCATAAAGGCTGTGGCTACTCCTGATTCAGCTATTG
AGTTACCTTTAACTGCTGAGAATATTGAAAGTGTATTGGATGAAATTCGA
CCATATCTTATATCAGATGGGGGAAATGTGGCATTACATGAGATTGATGG
CAATGTTGTACGATTGAAGCTACAGGGAGCATGTGGGTCTTGCCCCAGTT
CTGTTATGACGATGAAGATGGGTATTGAGCGTCGCTTAATGGAGAAGATC
CCCGAGATAGTTGCAGTGGAATCGGTAGCAGATGAAGAAACTGGGCTTGA
GCTGAATGAAGAAATATAGAGAAGGTACTTGAGGAAATCAGGCCCTATCT
TGTTGGGGCAGCAGGTGGATCACTTGGACTTGTGACAATTGATGAACCAA
TATTTAAAGGTCGAAATTAACGGGTCCGGCAGCTGGAATCATGACTGGTC
CGGGGGGGTGGTTACCCAAAATTTGGGTGAAAAAATCCCGCCCATTGGAG
CCATTCCACCTTCGGGAATGTCCAACAGCTGGGGGTC
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