CX302191

Overview
NameCX302191
Unique NameCX302191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.403e-25
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 ADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            AD+HNNVLKGAPHPPSLLM D WTKPYSREYAA+PA+WLR AKFWP TGRVDNVYG
Sbjct:  979 ADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYG 1034          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.551e-24
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            DI+NNVLKGAPHPPS+LM D WTKPYSREYAAYPA WLR AKFWP TGRVDNVYG
Sbjct:  959 DINNNVLKGAPHPPSMLMADAWTKPYSREYAAYPAPWLRSAKFWPTTGRVDNVYG 1013          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.513e-24
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 ADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            AD+ NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYG
Sbjct:  961 ADVQNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYG 1016          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.715e-23
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 ADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            AD +NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYG
Sbjct:  967 ADPNNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYG 1022          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.112e-22
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D++NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYG
Sbjct:  961 DLNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYG 1015          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.896e-22
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYG
Sbjct:  958 DFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYG 1012          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.896e-22
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYG
Sbjct:  958 DFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYG 1012          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.896e-22
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYG
Sbjct:  958 DFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYG 1012          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_BDEBA (Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio bacteriovorus GN=gcvP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.530e-14
Identity = 33/55 (60.00%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D  NN LK APH   +LM   W  PYSRE A YP  WLR  KFWP  GRVDN YG
Sbjct:  888 DKENNALKNAPHTAQMLMKPEWNHPYSREEAVYPVEWLRGNKFWPVVGRVDNAYG 942          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.222e-14
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 ADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            +D   N LK APHP  +L  + W  PYSRE AAYPA WLR  KFWPA  R+DN YG
Sbjct:  885 SDRQQNPLKNAPHPALMLATEPWPYPYSREVAAYPAPWLREYKFWPAVARIDNAYG 940          
The following BLAST results are available for this feature:
BLAST of CX302191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GCSP_PEA1.403e-2587.50Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU1.551e-2487.27Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH4.513e-2483.93Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH1.715e-2383.93Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR1.112e-2281.82Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLATR1.896e-2281.82Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN1.896e-2281.82Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR1.896e-2281.82Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_BDEBA5.530e-1460.00Glycine dehydrogenase [decarboxylating] OS=Bdellov... [more]
GCSP_THEEB7.222e-1458.93Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]

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Properties
Property NameValue
Genbank descriptionC08018B03SK PhyRootSw1 Citrus sinensis cDNA clone C08018B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302191 ID=CX302191; Name=CX302191; organism=Citrus sinensis; type=EST; length=169bp
GCAGATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTT
GCTCATGGGAGATACATGGACTAAACCATACTCTCGAGAATATGCAGCCT
ATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGGCCTGCTACAGGACGC
GTTGACAATGTGTATGGTG
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