CX302190

Overview
NameCX302190
Unique NameCX302190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302190 vs. ExPASy Swiss-Prot
Match: ALG13_HUMAN (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.961e-23
Identity = 60/163 (36.81%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  150 RIVF*TVGTTCFDALVKAADTLEVKQELTRTGYAHLLIQMGQGTYLPAESIGEDGLLAVDCFTFXXXXXXXXXXXXXVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDLKSLLPYQPGDATPVAKLINRFLG 638
            + VF TVGTT FD L+      +  Q++   GY  L++Q+G+GT +P     E     +D + +             VISHAG+GS  ETL  GKPL+VV+NE LM+NHQ ELA++L    HL+     +L  ++  MDL +L  Y PG     +  +++ +G
Sbjct:    2 KCVFVTVGTTSFDDLIACVSAPDSLQKIESLGYNRLILQIGRGTVVPEPFSTES--FTLDVYRYKDSLKEDIQKADLVISHAGAGSCLETLEKGKPLVVVINEKLMNNHQLELAKQLHKEGHLFYCTCSTLPGLLQSMDLSTLKCYPPGQPEKFSAFLDKVVG 162          
BLAST of CX302190 vs. ExPASy Swiss-Prot
Match: ALG13_MOUSE (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.505e-22
Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  159 F*TVGTTCFDALVKAADTLEVKQELTRTGYAHLLIQMGQGTYLPAESIGEDGLLAVDCFTFXXXXXXXXXXXXXVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDLKSLLPYQPGDATPVAKLINRFLG 638
            F TVGTT FD LV      +  Q L   GY HL++Q+G+GT +P     E     +D + +             VISHAG+GS  E+L  GKPL+VVVNE LM+NHQ ELA++L    HL+     +L  ++  MDL +L  Y PG     +  +++ +G
Sbjct:    5 FVTVGTTSFDELVARVVANDCVQILESLGYNHLVLQVGRGTVVPKPFRTES--FTLDVYRYKDSLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSTLPGLLQSMDLSTLKCYPPGQPEKFSAFLDKVVG 162          
BLAST of CX302190 vs. ExPASy Swiss-Prot
Match: ALG13_RAT (UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus GN=Alg13 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.568e-22
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  159 F*TVGTTCFDALVKAADTLEVKQELTRTGYAHLLIQMGQGTYLPAESIGEDGLLAVDCFTFXXXXXXXXXXXXXVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDLKSLLPYQPGDATPVAKLINRFLG 638
            F TVGTT FD LV      +  Q L   GY HL++Q+G+GT +P     E     +D + +             VISHAG+GS  E+L  GKPL+VVVNE LM+NHQ ELA++L    HL+      L  ++  MDL +L  Y PG     +  +++ +G
Sbjct:    5 FVTVGTTSFDDLVARVVANDTVQILKSLGYNHLVLQIGRGTVVPEPFSTEP--FTLDVYRYKESLKEDLQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSMLPGLLQSMDLSTLKCYPPGQPEKFSAFLDKVVG 162          
BLAST of CX302190 vs. ExPASy Swiss-Prot
Match: ALG13_SCHPO (UDP-N-acetylglucosamine transferase subunit alg13 OS=Schizosaccharomyces pombe GN=alg13 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.105e-16
Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 3
Query:  159 F*TVGTTCFDALVKAADTLEVKQELTRTGYAHLLIQMGQGTYLPAESIGEDGLLAVDCFTFXXXXXXXXXXXXXVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDLKSLLPYQPGDATPVAKLI 623
            F TVG+T FD L++A    E +  L + G   L++Q G+G     +     GL  +  F +             VISHAG+GSI +TLR GK L+VV NE LMDNHQ ELA +LA   +L      +L + +  +  K L P+   D +   K++
Sbjct:    4 FVTVGSTQFDDLIRAVLKPEFQHCLVKHGINQLIVQYGKGKQAFGDPKSVAGLTILG-FDYAPEIESYIHDASIVISHAGAGSILQTLRSGKRLLVVPNESLMDNHQVELATKLASMNYLVTCSTSNLVEGLEELYPKILTPFPKSDCSTFQKVM 157          
BLAST of CX302190 vs. ExPASy Swiss-Prot
Match: ALG13_YARLI (UDP-N-acetylglucosamine transferase subunit ALG13 OS=Yarrowia lipolytica GN=ALG13 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.846e-15
Identity = 43/118 (36.44%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  165 TVGTTCFDALVKAADTLEVKQELTRTGYAHLLIQMGQGTYLPAESIGEDGLLAVDCFTFXXXXXXXXXXXXXVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL 518
            T GT  F+AL++   + E    L++ G++ + +Q G+G         ++G++++  F +             VISHAG+GS+ + LR+GK  +VVVN  LMDNHQ E+AEEL  ++HL
Sbjct:   34 TGGTVPFEALIELVLSHESITTLSQLGFSKMRVQYGRGNRHIFTKHHKEGVMSITGFEYTDDLAGEMSRAHLVISHAGTGSVLDALRIGKHPVVVVNSKLMDNHQIEIAEELFRKRHL 151          
The following BLAST results are available for this feature:
BLAST of CX302190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ALG13_HUMAN3.961e-2336.81UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_MOUSE1.505e-2238.75UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_RAT2.568e-2238.75UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
ALG13_SCHPO2.105e-1636.13UDP-N-acetylglucosamine transferase subunit alg13 ... [more]
ALG13_YARLI8.846e-1536.44UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08018B02SK PhyRootSw1 Citrus sinensis cDNA clone C08018B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302190 ID=CX302190; Name=CX302190; organism=Citrus sinensis; type=EST; length=784bp
AATTCGGCACGTAGGGCCGAATGAAGGGGAAAGAAAAGGAAGAAGCTTTA
TACTAGTGGTTGATACCGTTCTTGAAGTGTGCATTTTGAATAGAACAGAG
TCATAGATAACAAAATTCTATGGGCGGTACCGATAGTGTGAGCTTGAAGA
GAATTGTGTTTTGAACGGTGGGAACAACATGCTTTGATGCTCTTGTGAAA
GCGGCGGATACTTTGGAAGTAAAACAAGAGCTGACAAGAACAGGATATGC
TCATCTTCTCATTCAAATGGGTCAAGGAACCTATTTACCTGCTGAGTCCA
TTGGAGAGGATGGCCTCTTGGCTGTCGACTGTTTCACCTTTTCGTCAAGT
ATTGCCGACCATCTTAGCTCTGCATCTCTTGTAATCAGTCATGCTGGGTC
AGGGAGCATATTCGAGACCTTACGGCTTGGTAAACCTTTGATAGTGGTGG
TGAATGAAGACTTGATGGACAATCATCAGAGTGAGCTAGCAGAAGAACTA
GCAGATAGGAAGCATTTATATTGTGCTCATCCTCAATCCCTTCATCAGGT
TATAGTGGGTATGGATTTGAAATCTCTCCTACCATACCAACCTGGTGATG
CCACACCAGTTGCCAAGCTTATAAACAGATTTCTAGGTTTCCCTGATGAT
TGATTAAGTTACAGAATTAATGTTGATAAGCGAAACAACTAGGCAGGTGT
TATACTTCATTTTTTTCTTTTTTCCCCCTGCTCACTATACCCTGAATTAT
GTCATCAGGTATACACAGTGTTGTAGGGAAAATT
back to top