CX301947

Overview
NameCX301947
Unique NameCX301947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX301947 vs. ExPASy Swiss-Prot
Match: 7SB1_SOYBN (Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.567e-23
Identity = 61/137 (44.53%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   43 VLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKN-VVWSIHGQNSMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENYLLQFDLATSRLGFSDSLLFE---RATCTFNFTS 441
            VL+ S+Y+A  Q FA  +PK A+V  VAPFG CF    I         P +DLV+   N  VW I G++ MVQ      CLG ++GG+ PR  I +GARQLE  L+ FDLA SR+GFS S L     +    FNF +
Sbjct:  296 VLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADLFNFAN 426
[Close]
BLAST of CX301947 vs. ExPASy Swiss-Prot
Match: 7SBG2_SOYBN (Basic 7S globulin 2 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:   43 VLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKN-VVWSIHGQNSMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENYLLQFDLATSRLGFSDSLLFERAT-C--TFNFTS 441
            VL+ S+Y+A  Q FA  + K A+V  VAPFG CF    I         P +DLV+   N  VW I G++ MVQ      CLG ++GG+ PR  + +G RQLE  L+ FDLA SR+GFS S L      C   FNF +
Sbjct:  302 VLQQSLYQAFTQVFAQQLEKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEVTLGTRQLEEKLMVFDLARSRVGFSTSSLHSHGVKCGDLFNFAN 432
The following BLAST results are available for this feature:
BLAST of CX301947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
7SB1_SOYBN7.567e-2344.53Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2[more]
7SBG2_SOYBN3.179e-2143.07Basic 7S globulin 2 OS=Glycine max PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionC08015D10SK PhyRootSw1 Citrus sinensis cDNA clone C08015D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301947 ID=CX301947; Name=CX301947; organism=Citrus sinensis; type=EST; length=618bp
GAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGACAGTCCTGGA
AACTTCAATCTACAAGGCTCTTGTTCAAGCCTTTGCTAGTGCCATGCCTA
AAGTCGCCAGAGTGGCTCCTGTGGCACCATTCGGGGCATGTTTTAGACTG
CAAGACATTGGTTTCACCCGTATAGGCCCAGTCGTGCCTCAAATAGATCT
GGTTTTGCAGAACAAGAACGTGGTTTGGAGTATCCATGGACAAAACTCAA
TGGTGCAGATTGGCGGCGATGCGTTGTGCTTGGGGTTTGTGGATGGAGGA
GTAAACCCTAGGACTTCCATTGTCATTGGAGCGCGCCAGCTGGAAAACTA
TCTGCTTCAGTTTGATTTAGCTACTTCAAGACTTGGCTTCAGCGACTCAC
TACTGTTCGAGCGAGCCACTTGCACCTTCAACTTTACATCCATTGCATAA
TAATTTTAAGCATGTTTGCCTGTTATTTGTGTGATGAATAAAATGGTCAT
GGACCAATGATTCGACGCAATGGTCAGACCAAATAATGTACCTTGCTGCA
CTTGATCAATTTAATTTATTATTAAGAGAATAAAAGATATATTTTTGAAG
TAAAAAAAAAAAAAAAAA
back to top