CX301945

Overview
NameCX301945
Unique NameCX301945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.740e-118
Identity = 207/213 (97.18%), Postives = 211/213 (99.06%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVD+TEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACC+MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.740e-118
Identity = 207/213 (97.18%), Postives = 211/213 (99.06%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVD+TEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACC+MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 1.661e-117
Identity = 205/213 (96.24%), Postives = 211/213 (99.06%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEA+YDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACC+MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 4.834e-117
Identity = 208/213 (97.65%), Postives = 210/213 (98.59%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNS+LSTHSLLEHTDVAVMLDNEAIYDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPA+MMAKCDPRHGKYMAC MMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 1.077e-116
Identity = 202/213 (94.84%), Postives = 211/213 (99.06%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNSVLSTHSLLEHTDVA+MLDNEAIYDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVD+TEFQTNLVPYPRIHFMLSSYAP++SAEKAYHEQLSV+EITNSAFEPA+MMAKCDPRHGKYMACC+MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 1.077e-116
Identity = 205/213 (96.24%), Postives = 210/213 (98.59%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQ+STAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHF+LSSYAPIISAEKAYHEQLSVAEITN+AFEPASMMAKCDPRHGKYMACC+MYRGDVVPKDVNAS+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISNSTAIAE
Sbjct:  174 SPQISTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFVLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 2.399e-116
Identity = 204/213 (95.77%), Postives = 210/213 (98.59%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEA+YDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYHEQLSVAEITNS+FEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNA++ATIKTKRTIQFVDW PTGFK GINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 2.399e-116
Identity = 205/213 (96.24%), Postives = 208/213 (97.65%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITN+AFEPASMM KCDPRHGKYMACC+MYRGDVVPKDVNAS+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISNSTAI E
Sbjct:  174 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIGE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 3.133e-116
Identity = 202/213 (94.84%), Postives = 210/213 (98.59%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNSVLSTHSLLEHTDV+VMLDNEA+YDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVD+TEFQTNLVPYPRIHFMLSSY+P+ISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACC+MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSVLSTHSLLEHTDVSVMLDNEAVYDICRRSLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYSPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAE 386
[Close]
BLAST of CX301945 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 4.092e-116
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 3 
Query:   42 SPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRQLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKAGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAE 680
            SPQVSTAVVEPYNS+LSTHSLLEHTDVAVMLDNEAIYDICRR LDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPA+MMAKCDPRHGKYMAC MMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFK GINYQP TVVPGGDLAKVMRAVCMISNSTAIAE
Sbjct:  174 SPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPSTVVPGGDLAKVMRAVCMISNSTAIAE 386
The following BLAST results are available for this feature:
BLAST of CX301945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBA_TOXGO9.740e-11897.18Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA9.740e-11897.18Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA_OXYGR1.661e-11796.24Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA_TETTH4.834e-11797.65Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_PLAFK1.077e-11694.84Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_EUGGR1.077e-11696.24Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA_EUPOC2.399e-11695.77Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA1_CHLRE2.399e-11696.24Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA_CHLVU3.133e-11694.84Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA_TETPY4.092e-11697.18Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC08015D08SK PhyRootSw1 Citrus sinensis cDNA clone C08015D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301945 ID=CX301945; Name=CX301945; organism=Citrus sinensis; type=EST; length=682bp
CGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCTCTCCTCAA
GTCTCAACTGCCGTCGTTGAACCCTACAACTCCGTCTTGTCCACTCACTC
CCTCTTGGAACACACTGATGTCGCTGTTATGCTTGATAACGAAGCTATCT
ACGATATCTGCAGAAGACAACTCGATATCGAAAGACCCACTTACACCAAC
TTGAACAGACTCATTGCTCAAGTCATCTCCTCTTTGACTGCCTCTTTGAG
ATTCGATGGTGCCCTCAACGTCGATATCACTGAATTCCAAACTAACTTGG
TCCCCTACCCCAGAATCCATTTCATGTTGTCCTCTTATGCCCCCATCATC
TCCGCTGAAAAGGCCTATCACGAACAACTCTCCGTTGCTGAAATCACCAA
CTCTGCTTTCGAACCTGCCTCTATGATGGCTAAGTGCGATCCCAGACACG
GTAAATATATGGCCTGCTGCATGATGTACAGAGGTGATGTCGTCCCCAAG
GATGTCAATGCTTCCATTGCCACCATCAAGACCAAGAGAACCATCCAATT
CGTCGACTGGTGCCCCACTGGTTTCAAGGCTGGTATCAACTACCAACCCC
CCACTGTCGTCCCTGGTGGTGATCTTGCTAAGGTCATGAGAGCTGTCTGC
ATGATTTCCAACTCCACTGCTATTGCTGAAGT
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