CX301943

Overview
NameCX301943
Unique NameCX301943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301943 vs. ExPASy Swiss-Prot
Match: PSBO_VOLCA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Volvox carteri GN=PSBO PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   24 KKLFKENNKVFDVLKGNVEFAVTKVNAEEGEFGGVFVSNQPSDTDMGAKAPKNILIKGIFSGKLEQ 221
            ++L KEN K    LKG+  F+V KVN   GE  GVF S QPSDTD+GAK PK+I I G++ G+L Q
Sbjct:  228 EELLKENVKSTKALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQLSQ 293          
BLAST of CX301943 vs. ExPASy Swiss-Prot
Match: PSBO_PEA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:    6 AGEEGDKK-LFKENNKVFDVLKGNVEFAVTKVNAEEGEFGGVFVSNQPSDTDMGAKAPKNILIKGIFSGKLE 218
            AG  GD++ L KENNK     KG +  +VT+   E GE  GVF S QPSDTD+GAKAPK++ I+G++  +LE
Sbjct:  257 AGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 328          
BLAST of CX301943 vs. ExPASy Swiss-Prot
Match: PSBO_SPIOL (Oxygen-evolving enhancer protein 1, chloroplastic OS=Spinacia oleracea GN=PSBO PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    6 AGEEGDKK-LFKENNKVFDVLKGNVEFAVTKVNAEEGEFGGVFVSNQPSDTDMGAKAPKNILIKGIFSGKLEQ 221
            AG  GD++ L KENNK     KG +  +VT    E GE  GVF S QPSDTD+GAK PK++ I+G++  +LEQ
Sbjct:  259 AGGRGDEEELQKENNKNVASSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLEQ 331          
BLAST of CX301943 vs. ExPASy Swiss-Prot
Match: PSBO_SOLTU (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 3
Query:    6 AGEEGDKK-LFKENNKVFDVLKGNVEFAVTKVNAEEGEFGGVFVSNQPSDTDMGAKAPKNILIKGIFSGKLE 218
            AG  GD++ L KEN K    L G + F VTK N + GE  GVF S QPSDTD+GAK PK++ I+GI+  +LE
Sbjct:  261 AGGRGDEEELQKENVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLE 332          
BLAST of CX301943 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   24 KKLFKENNKVFDVLKGNVEFAVTKVNAEEGEFGGVFVSNQPSDTDMGAKAPKNILIKGIFSGKLE 218
            ++L KEN K+   LKG+  F+V KV+   GE  GVF S QPSDTD+GAK PK+I + G++  +L+
Sbjct:  227 EELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291          
BLAST of CX301943 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.910e-11
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 3
Query:   21 DKKLFKENNKVFDVLKGNVEFAVTKVNAEEGEFGGVFVSNQPSDTDMGAKAPKNILIKGIFSGKL 215
            D++  KEN+K      G + F V KVNAE GE  GVF S QPSDTD+GAK PK+I   G++  ++
Sbjct:  270 DEEYAKENSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334          
The following BLAST results are available for this feature:
BLAST of CX301943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSBO_VOLCA1.806e-1254.55Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_PEA8.963e-1251.39Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SPIOL1.529e-1150.68Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLTU1.997e-1152.78Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_CHLRE5.810e-1149.23Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR9.910e-1149.23Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC08015D06SK PhyRootSw1 Citrus sinensis cDNA clone C08015D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301943 ID=CX301943; Name=CX301943; organism=Citrus sinensis; type=EST; length=406bp
TACAAGCAGGTGAAGAAGGAGACAAGAAGTTATTCAAGGAGAACAATAAA
GTCTTTGATGTCTTAAAGGGTAATGTAGAGTTCGCTGTGACAAAGGTCAA
TGCAGAGGAAGGTGAATTTGGTGGTGTCTTCGTCTCAAATCAACCATCTG
ATACTGATATGGGTGCCAAGGCTCCTAAGAACATCTTAATCAAGGGTATC
TTCTCAGGCAAACTCGAGCAATAAATTAGAACCCCCTCTCCTCAGTGCTG
TTTTGTCTATCCTCATCGATCTCCTCTATTTTGGTTTCCCCTTTCTTTCC
TAATTAACTTCTTTCTTTCTAATTAATAGTTAGTTCTGGAAAGATCAATA
TAATAATTGTAACCTTTCATGCTTAAGTAAAGGAAAAAAAAAAGGGGGGG
CCCGGT
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